Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SMKR1H3BMG3 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC14.94□□□□□ -0.02
SMKR1H3BMG3 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
SMKR1H3BMG3 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SMKR1H3BMG3 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC14.94□□□□□ -0.02
SMKR1H3BMG3 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
SMKR1H3BMG3 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
SMKR1H3BMG3 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SMKR1H3BMG3 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC14.94□□□□□ -0.02
SMKR1H3BMG3 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SMKR1H3BMG3 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SMKR1H3BMG3 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC14.94□□□□□ -0.02
SMKR1H3BMG3 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC14.94□□□□□ -0.02
SMKR1H3BMG3 MIR3181-201ENST00000578512 73 ntBASIC14.94□□□□□ -0.02
SMKR1H3BMG3 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC14.94□□□□□ -0.02
SMKR1H3BMG3 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC14.94□□□□□ -0.02
SMKR1H3BMG3 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SMKR1H3BMG3 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
SMKR1H3BMG3 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SMKR1H3BMG3 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC14.94□□□□□ -0.02
SMKR1H3BMG3 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC14.94□□□□□ -0.02
SMKR1H3BMG3 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC14.94□□□□□ -0.02
SMKR1H3BMG3 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SMKR1H3BMG3 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
SMKR1H3BMG3 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
SMKR1H3BMG3 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SMKR1H3BMG3 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
SMKR1H3BMG3 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SMKR1H3BMG3 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
SMKR1H3BMG3 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SMKR1H3BMG3 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC14.93□□□□□ -0.02
SMKR1H3BMG3 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SMKR1H3BMG3 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SMKR1H3BMG3 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SMKR1H3BMG3 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SMKR1H3BMG3 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SMKR1H3BMG3 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC14.93□□□□□ -0.02
SMKR1H3BMG3 AC012354.3-201ENST00000623734 483 ntBASIC14.93□□□□□ -0.02
SMKR1H3BMG3 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
SMKR1H3BMG3 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC14.93□□□□□ -0.02
SMKR1H3BMG3 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SMKR1H3BMG3 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
SMKR1H3BMG3 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
SMKR1H3BMG3 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SMKR1H3BMG3 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
SMKR1H3BMG3 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SMKR1H3BMG3 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SMKR1H3BMG3 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SMKR1H3BMG3 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SMKR1H3BMG3 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SMKR1H3BMG3 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SMKR1H3BMG3 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC14.93□□□□□ -0.02
SMKR1H3BMG3 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC14.93□□□□□ -0.02
SMKR1H3BMG3 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC14.93□□□□□ -0.02
SMKR1H3BMG3 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
SMKR1H3BMG3 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
SMKR1H3BMG3 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SMKR1H3BMG3 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SMKR1H3BMG3 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
SMKR1H3BMG3 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
SMKR1H3BMG3 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SMKR1H3BMG3 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
SMKR1H3BMG3 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
SMKR1H3BMG3 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SMKR1H3BMG3 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
SMKR1H3BMG3 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
SMKR1H3BMG3 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
SMKR1H3BMG3 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SMKR1H3BMG3 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC14.92□□□□□ -0.02
SMKR1H3BMG3 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
SMKR1H3BMG3 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC14.92□□□□□ -0.02
SMKR1H3BMG3 AC125437.2-201ENST00000625180 2167 ntBASIC14.92□□□□□ -0.02
SMKR1H3BMG3 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SMKR1H3BMG3 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
SMKR1H3BMG3 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC14.92□□□□□ -0.02
SMKR1H3BMG3 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SMKR1H3BMG3 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
SMKR1H3BMG3 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC14.92□□□□□ -0.02
SMKR1H3BMG3 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SMKR1H3BMG3 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SMKR1H3BMG3 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC14.91□□□□□ -0.02
SMKR1H3BMG3 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
SMKR1H3BMG3 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SMKR1H3BMG3 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SMKR1H3BMG3 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
SMKR1H3BMG3 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC14.91□□□□□ -0.02
SMKR1H3BMG3 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
SMKR1H3BMG3 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
SMKR1H3BMG3 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
SMKR1H3BMG3 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SMKR1H3BMG3 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC14.91□□□□□ -0.02
SMKR1H3BMG3 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SMKR1H3BMG3 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SMKR1H3BMG3 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SMKR1H3BMG3 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SMKR1H3BMG3 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SMKR1H3BMG3 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC14.91□□□□□ -0.02
SMKR1H3BMG3 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
SMKR1H3BMG3 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SMKR1H3BMG3 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms