Protein–RNA interactions for Protein: F8WFD2

NPIPA3, Nuclear pore complex-interacting protein family member A3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA3F8WFD2 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC18.64■□□□□ 0.58
NPIPA3F8WFD2 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
NPIPA3F8WFD2 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NPIPA3F8WFD2 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
NPIPA3F8WFD2 AC007375.3-201ENST00000600936 2314 ntBASIC18.64■□□□□ 0.57
NPIPA3F8WFD2 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NPIPA3F8WFD2 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC18.64■□□□□ 0.57
NPIPA3F8WFD2 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
NPIPA3F8WFD2 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NPIPA3F8WFD2 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NPIPA3F8WFD2 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
NPIPA3F8WFD2 KRT17P1-201ENST00000399211 1546 ntBASIC18.64■□□□□ 0.57
NPIPA3F8WFD2 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NPIPA3F8WFD2 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC18.64■□□□□ 0.57
NPIPA3F8WFD2 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NPIPA3F8WFD2 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NPIPA3F8WFD2 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NPIPA3F8WFD2 AL024507.2-201ENST00000606070 2574 ntBASIC18.63■□□□□ 0.57
NPIPA3F8WFD2 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
NPIPA3F8WFD2 FEM1AP4-201ENST00000443167 1987 ntBASIC18.63■□□□□ 0.57
NPIPA3F8WFD2 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NPIPA3F8WFD2 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.63■□□□□ 0.57
NPIPA3F8WFD2 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC18.63■□□□□ 0.57
NPIPA3F8WFD2 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.63■□□□□ 0.57
NPIPA3F8WFD2 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NPIPA3F8WFD2 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NPIPA3F8WFD2 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.63■□□□□ 0.57
NPIPA3F8WFD2 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NPIPA3F8WFD2 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
NPIPA3F8WFD2 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC18.62■□□□□ 0.57
NPIPA3F8WFD2 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC18.62■□□□□ 0.57
NPIPA3F8WFD2 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC18.62■□□□□ 0.57
NPIPA3F8WFD2 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NPIPA3F8WFD2 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC18.62■□□□□ 0.57
NPIPA3F8WFD2 AC007322.3-201ENST00000426526 701 ntBASIC18.62■□□□□ 0.57
NPIPA3F8WFD2 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.62■□□□□ 0.57
NPIPA3F8WFD2 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NPIPA3F8WFD2 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC18.62■□□□□ 0.57
NPIPA3F8WFD2 CYP2T3P-201ENST00000601990 817 ntBASIC18.62■□□□□ 0.57
NPIPA3F8WFD2 ITM2C-210ENST00000620962 501 ntBASIC18.62■□□□□ 0.57
NPIPA3F8WFD2 AC066615.1-201ENST00000640911 628 ntBASIC18.62■□□□□ 0.57
NPIPA3F8WFD2 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.62■□□□□ 0.57
NPIPA3F8WFD2 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC18.62■□□□□ 0.57
NPIPA3F8WFD2 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NPIPA3F8WFD2 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
NPIPA3F8WFD2 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
NPIPA3F8WFD2 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
NPIPA3F8WFD2 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NPIPA3F8WFD2 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
NPIPA3F8WFD2 PALM-207ENST00000590161 2137 ntTSL 4 BASIC18.61■□□□□ 0.57
NPIPA3F8WFD2 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
NPIPA3F8WFD2 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NPIPA3F8WFD2 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NPIPA3F8WFD2 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC18.61■□□□□ 0.57
NPIPA3F8WFD2 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
NPIPA3F8WFD2 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC18.61■□□□□ 0.57
NPIPA3F8WFD2 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NPIPA3F8WFD2 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NPIPA3F8WFD2 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NPIPA3F8WFD2 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
NPIPA3F8WFD2 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
NPIPA3F8WFD2 PTPA-214ENST00000423100 988 ntTSL 2 BASIC18.61■□□□□ 0.57
NPIPA3F8WFD2 VMO1-204ENST00000441199 741 ntTSL 2 BASIC18.61■□□□□ 0.57
NPIPA3F8WFD2 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.61■□□□□ 0.57
NPIPA3F8WFD2 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC18.61■□□□□ 0.57
NPIPA3F8WFD2 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.61■□□□□ 0.57
NPIPA3F8WFD2 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NPIPA3F8WFD2 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.61■□□□□ 0.57
NPIPA3F8WFD2 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC18.61■□□□□ 0.57
NPIPA3F8WFD2 AC100791.3-201ENST00000617619 330 ntBASIC18.61■□□□□ 0.57
NPIPA3F8WFD2 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC18.61■□□□□ 0.57
NPIPA3F8WFD2 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NPIPA3F8WFD2 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NPIPA3F8WFD2 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC18.61■□□□□ 0.57
NPIPA3F8WFD2 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC18.6■□□□□ 0.57
NPIPA3F8WFD2 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NPIPA3F8WFD2 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
NPIPA3F8WFD2 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
NPIPA3F8WFD2 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
NPIPA3F8WFD2 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NPIPA3F8WFD2 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.6■□□□□ 0.57
NPIPA3F8WFD2 MCRIP2P1-201ENST00000394346 511 ntBASIC18.6■□□□□ 0.57
NPIPA3F8WFD2 ESRRAP1-201ENST00000400596 1257 ntBASIC18.6■□□□□ 0.57
NPIPA3F8WFD2 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC18.6■□□□□ 0.57
NPIPA3F8WFD2 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
NPIPA3F8WFD2 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC18.6■□□□□ 0.57
NPIPA3F8WFD2 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
NPIPA3F8WFD2 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC18.6■□□□□ 0.57
NPIPA3F8WFD2 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC18.6■□□□□ 0.57
NPIPA3F8WFD2 AC008687.6-201ENST00000596318 630 ntBASIC18.6■□□□□ 0.57
NPIPA3F8WFD2 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.6■□□□□ 0.57
NPIPA3F8WFD2 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NPIPA3F8WFD2 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
NPIPA3F8WFD2 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC18.6■□□□□ 0.57
NPIPA3F8WFD2 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NPIPA3F8WFD2 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
NPIPA3F8WFD2 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NPIPA3F8WFD2 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NPIPA3F8WFD2 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NPIPA3F8WFD2 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms