Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL6A6A6NMZ7 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC18.59■□□□□ 0.57
COL6A6A6NMZ7 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
COL6A6A6NMZ7 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL6A6A6NMZ7 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC18.59■□□□□ 0.57
COL6A6A6NMZ7 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL6A6A6NMZ7 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC18.58■□□□□ 0.57
COL6A6A6NMZ7 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC18.58■□□□□ 0.57
COL6A6A6NMZ7 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
COL6A6A6NMZ7 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
COL6A6A6NMZ7 PREB-202ENST00000406567 1910 ntTSL 5 BASIC18.58■□□□□ 0.57
COL6A6A6NMZ7 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
COL6A6A6NMZ7 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL6A6A6NMZ7 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
COL6A6A6NMZ7 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL6A6A6NMZ7 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC18.58■□□□□ 0.56
COL6A6A6NMZ7 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL6A6A6NMZ7 TMA16-209ENST00000513272 803 ntTSL 2 BASIC18.58■□□□□ 0.56
COL6A6A6NMZ7 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL6A6A6NMZ7 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.58■□□□□ 0.56
COL6A6A6NMZ7 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.58■□□□□ 0.56
COL6A6A6NMZ7 AC022616.7-201ENST00000525383 220 ntBASIC18.58■□□□□ 0.56
COL6A6A6NMZ7 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC18.58■□□□□ 0.56
COL6A6A6NMZ7 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL6A6A6NMZ7 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC18.57■□□□□ 0.56
COL6A6A6NMZ7 HTR7P1-201ENST00000538670 1336 ntBASIC18.57■□□□□ 0.56
COL6A6A6NMZ7 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL6A6A6NMZ7 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC18.57■□□□□ 0.56
COL6A6A6NMZ7 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC18.57■□□□□ 0.56
COL6A6A6NMZ7 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC18.57■□□□□ 0.56
COL6A6A6NMZ7 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL6A6A6NMZ7 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
COL6A6A6NMZ7 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
COL6A6A6NMZ7 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL6A6A6NMZ7 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL6A6A6NMZ7 NFE2L3P1-201ENST00000588207 1959 ntBASIC18.57■□□□□ 0.56
COL6A6A6NMZ7 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL6A6A6NMZ7 AC026396.1-201ENST00000419388 421 ntBASIC18.57■□□□□ 0.56
COL6A6A6NMZ7 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL6A6A6NMZ7 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL6A6A6NMZ7 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL6A6A6NMZ7 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL6A6A6NMZ7 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC18.56■□□□□ 0.56
COL6A6A6NMZ7 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC18.56■□□□□ 0.56
COL6A6A6NMZ7 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
COL6A6A6NMZ7 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC18.56■□□□□ 0.56
COL6A6A6NMZ7 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC18.56■□□□□ 0.56
COL6A6A6NMZ7 LINC01238-205ENST00000567549 1107 ntBASIC18.56■□□□□ 0.56
COL6A6A6NMZ7 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC18.56■□□□□ 0.56
COL6A6A6NMZ7 VPS72-207ENST00000640458 689 ntTSL 5 BASIC18.56■□□□□ 0.56
COL6A6A6NMZ7 MYC-208ENST00000641036 567 ntBASIC18.56■□□□□ 0.56
COL6A6A6NMZ7 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC18.56■□□□□ 0.56
COL6A6A6NMZ7 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL6A6A6NMZ7 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC18.56■□□□□ 0.56
COL6A6A6NMZ7 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL6A6A6NMZ7 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL6A6A6NMZ7 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.56■□□□□ 0.56
COL6A6A6NMZ7 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL6A6A6NMZ7 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.56■□□□□ 0.56
COL6A6A6NMZ7 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC18.56■□□□□ 0.56
COL6A6A6NMZ7 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
COL6A6A6NMZ7 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL6A6A6NMZ7 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL6A6A6NMZ7 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL6A6A6NMZ7 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL6A6A6NMZ7 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL6A6A6NMZ7 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL6A6A6NMZ7 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.55■□□□□ 0.56
COL6A6A6NMZ7 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC18.55■□□□□ 0.56
COL6A6A6NMZ7 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL6A6A6NMZ7 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL6A6A6NMZ7 AC139530.1-201ENST00000575312 1977 ntBASIC18.55■□□□□ 0.56
COL6A6A6NMZ7 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL6A6A6NMZ7 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
COL6A6A6NMZ7 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL6A6A6NMZ7 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL6A6A6NMZ7 AC087742.1-201ENST00000575880 1738 ntBASIC18.55■□□□□ 0.56
COL6A6A6NMZ7 MIR1238-201ENST00000408483 83 ntBASIC18.54■□□□□ 0.56
COL6A6A6NMZ7 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL6A6A6NMZ7 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL6A6A6NMZ7 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
COL6A6A6NMZ7 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL6A6A6NMZ7 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL6A6A6NMZ7 COMT-203ENST00000403184 2217 ntTSL 2 BASIC18.54■□□□□ 0.56
COL6A6A6NMZ7 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL6A6A6NMZ7 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC18.54■□□□□ 0.56
COL6A6A6NMZ7 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC18.54■□□□□ 0.56
COL6A6A6NMZ7 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL6A6A6NMZ7 MED25-212ENST00000618715 1467 ntTSL 5 BASIC18.54■□□□□ 0.56
COL6A6A6NMZ7 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL6A6A6NMZ7 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL6A6A6NMZ7 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC18.54■□□□□ 0.56
COL6A6A6NMZ7 AL450487.1-201ENST00000426799 995 ntBASIC18.54■□□□□ 0.56
COL6A6A6NMZ7 ISCU-203ENST00000431221 799 ntTSL 2 BASIC18.54■□□□□ 0.56
COL6A6A6NMZ7 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC18.54■□□□□ 0.56
COL6A6A6NMZ7 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC18.54■□□□□ 0.56
COL6A6A6NMZ7 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
COL6A6A6NMZ7 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL6A6A6NMZ7 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL6A6A6NMZ7 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms