Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRAV1-1A0A0B4J248 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
TRAV1-1A0A0B4J248 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRAV1-1A0A0B4J248 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRAV1-1A0A0B4J248 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC16■□□□□ 0.15
TRAV1-1A0A0B4J248 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC16■□□□□ 0.15
TRAV1-1A0A0B4J248 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
TRAV1-1A0A0B4J248 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
TRAV1-1A0A0B4J248 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRAV1-1A0A0B4J248 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRAV1-1A0A0B4J248 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRAV1-1A0A0B4J248 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRAV1-1A0A0B4J248 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRAV1-1A0A0B4J248 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC16■□□□□ 0.15
TRAV1-1A0A0B4J248 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRAV1-1A0A0B4J248 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
TRAV1-1A0A0B4J248 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
TRAV1-1A0A0B4J248 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRAV1-1A0A0B4J248 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRAV1-1A0A0B4J248 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC15.99■□□□□ 0.15
TRAV1-1A0A0B4J248 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV1-1A0A0B4J248 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV1-1A0A0B4J248 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV1-1A0A0B4J248 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV1-1A0A0B4J248 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV1-1A0A0B4J248 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV1-1A0A0B4J248 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV1-1A0A0B4J248 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV1-1A0A0B4J248 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC15.99■□□□□ 0.15
TRAV1-1A0A0B4J248 AC079598.2-202ENST00000546624 1451 ntBASIC15.99■□□□□ 0.15
TRAV1-1A0A0B4J248 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC15.99■□□□□ 0.15
TRAV1-1A0A0B4J248 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV1-1A0A0B4J248 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC15.99■□□□□ 0.15
TRAV1-1A0A0B4J248 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC15.99■□□□□ 0.15
TRAV1-1A0A0B4J248 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC15.99■□□□□ 0.15
TRAV1-1A0A0B4J248 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC15.99■□□□□ 0.15
TRAV1-1A0A0B4J248 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC15.99■□□□□ 0.15
TRAV1-1A0A0B4J248 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV1-1A0A0B4J248 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV1-1A0A0B4J248 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
TRAV1-1A0A0B4J248 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV1-1A0A0B4J248 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV1-1A0A0B4J248 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV1-1A0A0B4J248 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV1-1A0A0B4J248 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV1-1A0A0B4J248 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV1-1A0A0B4J248 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
TRAV1-1A0A0B4J248 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC15.99■□□□□ 0.15
TRAV1-1A0A0B4J248 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC15.98■□□□□ 0.15
TRAV1-1A0A0B4J248 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRAV1-1A0A0B4J248 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRAV1-1A0A0B4J248 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
TRAV1-1A0A0B4J248 TREX1-205ENST00000625293 1783 ntBASIC15.98■□□□□ 0.15
TRAV1-1A0A0B4J248 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRAV1-1A0A0B4J248 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRAV1-1A0A0B4J248 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRAV1-1A0A0B4J248 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRAV1-1A0A0B4J248 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRAV1-1A0A0B4J248 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
TRAV1-1A0A0B4J248 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC15.98■□□□□ 0.15
TRAV1-1A0A0B4J248 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
TRAV1-1A0A0B4J248 pRNA.6-201ENST00000610482 90 ntBASIC15.98■□□□□ 0.15
TRAV1-1A0A0B4J248 pRNA.5-201ENST00000612139 90 ntBASIC15.98■□□□□ 0.15
TRAV1-1A0A0B4J248 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC15.98■□□□□ 0.15
TRAV1-1A0A0B4J248 pRNA.11-201ENST00000618423 90 ntBASIC15.98■□□□□ 0.15
TRAV1-1A0A0B4J248 pRNA.13-201ENST00000619112 90 ntBASIC15.98■□□□□ 0.15
TRAV1-1A0A0B4J248 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC15.98■□□□□ 0.15
TRAV1-1A0A0B4J248 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC15.98■□□□□ 0.15
TRAV1-1A0A0B4J248 STAC-204ENST00000457375 1366 ntTSL 2 BASIC15.98■□□□□ 0.15
TRAV1-1A0A0B4J248 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC15.98■□□□□ 0.15
TRAV1-1A0A0B4J248 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
TRAV1-1A0A0B4J248 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRAV1-1A0A0B4J248 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC15.98■□□□□ 0.15
TRAV1-1A0A0B4J248 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRAV1-1A0A0B4J248 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
TRAV1-1A0A0B4J248 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TRAV1-1A0A0B4J248 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC15.97■□□□□ 0.15
TRAV1-1A0A0B4J248 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC15.97■□□□□ 0.15
TRAV1-1A0A0B4J248 ADK-206ENST00000541550 2222 ntTSL 2 BASIC15.97■□□□□ 0.15
TRAV1-1A0A0B4J248 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TRAV1-1A0A0B4J248 PVT1-219ENST00000523427 938 ntTSL 3 BASIC15.97■□□□□ 0.15
TRAV1-1A0A0B4J248 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
TRAV1-1A0A0B4J248 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC15.97■□□□□ 0.15
TRAV1-1A0A0B4J248 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
TRAV1-1A0A0B4J248 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC15.97■□□□□ 0.15
TRAV1-1A0A0B4J248 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TRAV1-1A0A0B4J248 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
TRAV1-1A0A0B4J248 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
TRAV1-1A0A0B4J248 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TRAV1-1A0A0B4J248 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TRAV1-1A0A0B4J248 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TRAV1-1A0A0B4J248 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TRAV1-1A0A0B4J248 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
TRAV1-1A0A0B4J248 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRAV1-1A0A0B4J248 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC15.96■□□□□ 0.15
TRAV1-1A0A0B4J248 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRAV1-1A0A0B4J248 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TRAV1-1A0A0B4J248 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
TRAV1-1A0A0B4J248 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC15.96■□□□□ 0.15
TRAV1-1A0A0B4J248 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms