Protein–RNA interactions for Protein: A0A096LP49

CCDC187, Coiled-coil domain-containing protein 187, humanhuman

Predictions only

Length 1,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC187A0A096LP49 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC187A0A096LP49 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC187A0A096LP49 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC187A0A096LP49 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC187A0A096LP49 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC187A0A096LP49 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC187A0A096LP49 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
CCDC187A0A096LP49 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
CCDC187A0A096LP49 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC187A0A096LP49 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
CCDC187A0A096LP49 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC187A0A096LP49 TSPY7P-201ENST00000431358 1114 ntBASIC19.48■□□□□ 0.71
CCDC187A0A096LP49 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC187A0A096LP49 TK2-204ENST00000525974 1178 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC187A0A096LP49 REXO2-216ENST00000544196 452 ntTSL 3 BASIC19.48■□□□□ 0.71
CCDC187A0A096LP49 AC006557.6-201ENST00000623071 864 ntBASIC19.48■□□□□ 0.71
CCDC187A0A096LP49 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC187A0A096LP49 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
CCDC187A0A096LP49 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC187A0A096LP49 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.47■□□□□ 0.71
CCDC187A0A096LP49 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC187A0A096LP49 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC187A0A096LP49 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC187A0A096LP49 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC187A0A096LP49 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC187A0A096LP49 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC187A0A096LP49 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
CCDC187A0A096LP49 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC187A0A096LP49 KRASP1-201ENST00000407852 552 ntBASIC19.47■□□□□ 0.71
CCDC187A0A096LP49 MIR1224-201ENST00000408193 85 ntBASIC19.47■□□□□ 0.71
CCDC187A0A096LP49 DHDH-203ENST00000522614 776 ntTSL 5 BASIC19.47■□□□□ 0.71
CCDC187A0A096LP49 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC19.47■□□□□ 0.71
CCDC187A0A096LP49 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC187A0A096LP49 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC19.47■□□□□ 0.71
CCDC187A0A096LP49 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC19.47■□□□□ 0.71
CCDC187A0A096LP49 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC19.47■□□□□ 0.71
CCDC187A0A096LP49 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
CCDC187A0A096LP49 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC187A0A096LP49 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC187A0A096LP49 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC187A0A096LP49 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC187A0A096LP49 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC19.47■□□□□ 0.71
CCDC187A0A096LP49 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC187A0A096LP49 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC187A0A096LP49 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.46■□□□□ 0.71
CCDC187A0A096LP49 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC187A0A096LP49 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
CCDC187A0A096LP49 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC187A0A096LP49 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC187A0A096LP49 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC187A0A096LP49 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
CCDC187A0A096LP49 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC187A0A096LP49 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
CCDC187A0A096LP49 RER1-204ENST00000378518 522 ntTSL 3 BASIC19.46■□□□□ 0.71
CCDC187A0A096LP49 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC19.46■□□□□ 0.71
CCDC187A0A096LP49 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC19.46■□□□□ 0.71
CCDC187A0A096LP49 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC187A0A096LP49 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
CCDC187A0A096LP49 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC19.46■□□□□ 0.71
CCDC187A0A096LP49 MIR4785-201ENST00000585005 73 ntBASIC19.46■□□□□ 0.71
CCDC187A0A096LP49 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
CCDC187A0A096LP49 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
CCDC187A0A096LP49 AL356652.1-201ENST00000615962 565 ntBASIC19.46■□□□□ 0.71
CCDC187A0A096LP49 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC187A0A096LP49 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.46■□□□□ 0.71
CCDC187A0A096LP49 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC187A0A096LP49 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
CCDC187A0A096LP49 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC187A0A096LP49 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC187A0A096LP49 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
CCDC187A0A096LP49 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC187A0A096LP49 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC187A0A096LP49 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC187A0A096LP49 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC187A0A096LP49 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
CCDC187A0A096LP49 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC187A0A096LP49 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC19.45■□□□□ 0.7
CCDC187A0A096LP49 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC19.45■□□□□ 0.7
CCDC187A0A096LP49 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC19.44■□□□□ 0.7
CCDC187A0A096LP49 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC187A0A096LP49 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC187A0A096LP49 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC187A0A096LP49 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC187A0A096LP49 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC187A0A096LP49 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC187A0A096LP49 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC187A0A096LP49 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC187A0A096LP49 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC187A0A096LP49 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC19.44■□□□□ 0.7
CCDC187A0A096LP49 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC187A0A096LP49 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC19.44■□□□□ 0.7
CCDC187A0A096LP49 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC187A0A096LP49 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC187A0A096LP49 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC187A0A096LP49 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC187A0A096LP49 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
CCDC187A0A096LP49 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC187A0A096LP49 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC187A0A096LP49 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC187A0A096LP49 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms