Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC26.23■■□□□ 1.79
USP42Q9H9J4 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
USP42Q9H9J4 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC26.23■■□□□ 1.79
USP42Q9H9J4 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
USP42Q9H9J4 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
USP42Q9H9J4 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC26.23■■□□□ 1.79
USP42Q9H9J4 AC010331.1-201ENST00000611423 582 ntBASIC26.23■■□□□ 1.79
USP42Q9H9J4 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC26.23■■□□□ 1.79
USP42Q9H9J4 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
USP42Q9H9J4 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
USP42Q9H9J4 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
USP42Q9H9J4 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC26.23■■□□□ 1.79
USP42Q9H9J4 GOLGA2P6-201ENST00000340929 2049 ntBASIC26.23■■□□□ 1.79
USP42Q9H9J4 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
USP42Q9H9J4 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC26.23■■□□□ 1.79
USP42Q9H9J4 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC26.23■■□□□ 1.79
USP42Q9H9J4 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
USP42Q9H9J4 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC26.22■■□□□ 1.79
USP42Q9H9J4 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC26.22■■□□□ 1.79
USP42Q9H9J4 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC26.22■■□□□ 1.79
USP42Q9H9J4 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
USP42Q9H9J4 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
USP42Q9H9J4 RPS2P55-201ENST00000397318 883 ntBASIC26.22■■□□□ 1.79
USP42Q9H9J4 AC107956.1-201ENST00000494359 873 ntBASIC26.22■■□□□ 1.79
USP42Q9H9J4 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC26.22■■□□□ 1.79
USP42Q9H9J4 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC26.22■■□□□ 1.79
USP42Q9H9J4 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC26.22■■□□□ 1.79
USP42Q9H9J4 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC26.22■■□□□ 1.79
USP42Q9H9J4 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC26.22■■□□□ 1.79
USP42Q9H9J4 NARF-205ENST00000412079 1760 ntTSL 5 BASIC26.22■■□□□ 1.79
USP42Q9H9J4 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC26.22■■□□□ 1.79
USP42Q9H9J4 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
USP42Q9H9J4 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
USP42Q9H9J4 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
USP42Q9H9J4 SERF2-207ENST00000409614 582 ntTSL 2 BASIC26.21■■□□□ 1.79
USP42Q9H9J4 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC26.21■■□□□ 1.79
USP42Q9H9J4 TSPY7P-201ENST00000431358 1114 ntBASIC26.21■■□□□ 1.79
USP42Q9H9J4 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC26.21■■□□□ 1.79
USP42Q9H9J4 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC26.21■■□□□ 1.79
USP42Q9H9J4 MTDHP1-201ENST00000605323 784 ntBASIC26.21■■□□□ 1.79
USP42Q9H9J4 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC26.21■■□□□ 1.79
USP42Q9H9J4 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC26.21■■□□□ 1.79
USP42Q9H9J4 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC26.21■■□□□ 1.79
USP42Q9H9J4 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
USP42Q9H9J4 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC26.21■■□□□ 1.79
USP42Q9H9J4 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
USP42Q9H9J4 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC26.2■■□□□ 1.79
USP42Q9H9J4 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC26.2■■□□□ 1.79
USP42Q9H9J4 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
USP42Q9H9J4 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC26.2■■□□□ 1.79
USP42Q9H9J4 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
USP42Q9H9J4 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC26.2■■□□□ 1.79
USP42Q9H9J4 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
USP42Q9H9J4 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC26.2■■□□□ 1.78
USP42Q9H9J4 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
USP42Q9H9J4 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.78
USP42Q9H9J4 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
USP42Q9H9J4 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC26.2■■□□□ 1.78
USP42Q9H9J4 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
USP42Q9H9J4 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
USP42Q9H9J4 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC26.2■■□□□ 1.78
USP42Q9H9J4 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
USP42Q9H9J4 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC26.19■■□□□ 1.78
USP42Q9H9J4 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
USP42Q9H9J4 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
USP42Q9H9J4 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
USP42Q9H9J4 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
USP42Q9H9J4 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC26.19■■□□□ 1.78
USP42Q9H9J4 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
USP42Q9H9J4 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC26.19■■□□□ 1.78
USP42Q9H9J4 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC26.19■■□□□ 1.78
USP42Q9H9J4 AC124016.1-201ENST00000609552 612 ntBASIC26.19■■□□□ 1.78
USP42Q9H9J4 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC26.19■■□□□ 1.78
USP42Q9H9J4 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
USP42Q9H9J4 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
USP42Q9H9J4 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
USP42Q9H9J4 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
USP42Q9H9J4 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
USP42Q9H9J4 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
USP42Q9H9J4 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
USP42Q9H9J4 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC26.19■■□□□ 1.78
USP42Q9H9J4 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC26.18■■□□□ 1.78
USP42Q9H9J4 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC26.18■■□□□ 1.78
USP42Q9H9J4 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
USP42Q9H9J4 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
USP42Q9H9J4 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC26.18■■□□□ 1.78
USP42Q9H9J4 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC26.18■■□□□ 1.78
USP42Q9H9J4 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
USP42Q9H9J4 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC26.18■■□□□ 1.78
USP42Q9H9J4 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
USP42Q9H9J4 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC26.18■■□□□ 1.78
USP42Q9H9J4 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC26.18■■□□□ 1.78
USP42Q9H9J4 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
USP42Q9H9J4 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
USP42Q9H9J4 STX5-203ENST00000394690 1568 ntTSL 5 BASIC26.18■■□□□ 1.78
USP42Q9H9J4 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
USP42Q9H9J4 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
USP42Q9H9J4 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC26.18■■□□□ 1.78
USP42Q9H9J4 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
USP42Q9H9J4 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms