Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 PPP1R14BP3-201ENST00000509033 445 ntBASIC18.68■□□□□ 0.58
NPAS1Q99742 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC18.68■□□□□ 0.58
NPAS1Q99742 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
NPAS1Q99742 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC18.68■□□□□ 0.58
NPAS1Q99742 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC18.68■□□□□ 0.58
NPAS1Q99742 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.68■□□□□ 0.58
NPAS1Q99742 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
NPAS1Q99742 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
NPAS1Q99742 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
NPAS1Q99742 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
NPAS1Q99742 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
NPAS1Q99742 AC011484.1-201ENST00000377652 1995 ntBASIC18.68■□□□□ 0.58
NPAS1Q99742 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
NPAS1Q99742 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
NPAS1Q99742 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC18.67■□□□□ 0.58
NPAS1Q99742 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
NPAS1Q99742 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC18.67■□□□□ 0.58
NPAS1Q99742 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC18.67■□□□□ 0.58
NPAS1Q99742 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NPAS1Q99742 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
NPAS1Q99742 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC18.67■□□□□ 0.58
NPAS1Q99742 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
NPAS1Q99742 AC007322.3-201ENST00000426526 701 ntBASIC18.67■□□□□ 0.58
NPAS1Q99742 VMO1-204ENST00000441199 741 ntTSL 2 BASIC18.67■□□□□ 0.58
NPAS1Q99742 AC093787.1-201ENST00000450396 207 ntBASIC18.67■□□□□ 0.58
NPAS1Q99742 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC18.67■□□□□ 0.58
NPAS1Q99742 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC18.67■□□□□ 0.58
NPAS1Q99742 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NPAS1Q99742 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NPAS1Q99742 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.67■□□□□ 0.58
NPAS1Q99742 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NPAS1Q99742 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
NPAS1Q99742 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NPAS1Q99742 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
NPAS1Q99742 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
NPAS1Q99742 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
NPAS1Q99742 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC18.66■□□□□ 0.58
NPAS1Q99742 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NPAS1Q99742 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
NPAS1Q99742 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
NPAS1Q99742 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC18.66■□□□□ 0.58
NPAS1Q99742 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
NPAS1Q99742 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
NPAS1Q99742 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
NPAS1Q99742 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
NPAS1Q99742 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
NPAS1Q99742 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
NPAS1Q99742 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
NPAS1Q99742 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC18.66■□□□□ 0.58
NPAS1Q99742 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
NPAS1Q99742 WT1-AS_3.1-201ENST00000613262 234 ntBASIC18.66■□□□□ 0.58
NPAS1Q99742 GXYLT1P5-201ENST00000614548 1189 ntBASIC18.66■□□□□ 0.58
NPAS1Q99742 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC18.66■□□□□ 0.58
NPAS1Q99742 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC18.66■□□□□ 0.58
NPAS1Q99742 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC18.66■□□□□ 0.58
NPAS1Q99742 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC18.66■□□□□ 0.58
NPAS1Q99742 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC18.66■□□□□ 0.58
NPAS1Q99742 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NPAS1Q99742 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
NPAS1Q99742 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NPAS1Q99742 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NPAS1Q99742 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NPAS1Q99742 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NPAS1Q99742 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC18.66■□□□□ 0.58
NPAS1Q99742 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NPAS1Q99742 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC18.65■□□□□ 0.58
NPAS1Q99742 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
NPAS1Q99742 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
NPAS1Q99742 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
NPAS1Q99742 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NPAS1Q99742 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
NPAS1Q99742 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
NPAS1Q99742 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
NPAS1Q99742 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
NPAS1Q99742 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NPAS1Q99742 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
NPAS1Q99742 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
NPAS1Q99742 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NPAS1Q99742 TK2-208ENST00000545043 1120 ntTSL 2 BASIC18.65■□□□□ 0.58
NPAS1Q99742 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC18.65■□□□□ 0.58
NPAS1Q99742 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC18.65■□□□□ 0.58
NPAS1Q99742 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC18.65■□□□□ 0.58
NPAS1Q99742 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NPAS1Q99742 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
NPAS1Q99742 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NPAS1Q99742 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC18.64■□□□□ 0.57
NPAS1Q99742 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
NPAS1Q99742 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
NPAS1Q99742 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
NPAS1Q99742 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC18.64■□□□□ 0.57
NPAS1Q99742 AC006970.2-201ENST00000450065 779 ntBASIC18.64■□□□□ 0.57
NPAS1Q99742 RARRES2P4-201ENST00000514074 484 ntBASIC18.64■□□□□ 0.57
NPAS1Q99742 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC18.64■□□□□ 0.57
NPAS1Q99742 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NPAS1Q99742 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NPAS1Q99742 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
NPAS1Q99742 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.64■□□□□ 0.57
NPAS1Q99742 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
NPAS1Q99742 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
NPAS1Q99742 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms