Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TIMP4Q99727 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC18.82■□□□□ 0.6
TIMP4Q99727 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TIMP4Q99727 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC18.82■□□□□ 0.6
TIMP4Q99727 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TIMP4Q99727 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
TIMP4Q99727 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TIMP4Q99727 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
TIMP4Q99727 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TIMP4Q99727 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC18.81■□□□□ 0.6
TIMP4Q99727 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.81■□□□□ 0.6
TIMP4Q99727 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TIMP4Q99727 PARN-205ENST00000539279 1557 ntTSL 2 BASIC18.81■□□□□ 0.6
TIMP4Q99727 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
TIMP4Q99727 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
TIMP4Q99727 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TIMP4Q99727 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TIMP4Q99727 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
TIMP4Q99727 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TIMP4Q99727 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC18.81■□□□□ 0.6
TIMP4Q99727 AC069236.1-201ENST00000604339 616 ntBASIC18.81■□□□□ 0.6
TIMP4Q99727 PFKL-212ENST00000628044 129 ntTSL 3 BASIC18.81■□□□□ 0.6
TIMP4Q99727 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC18.81■□□□□ 0.6
TIMP4Q99727 AC008694.1-202ENST00000636953 945 ntBASIC18.81■□□□□ 0.6
TIMP4Q99727 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TIMP4Q99727 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TIMP4Q99727 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TIMP4Q99727 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TIMP4Q99727 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TIMP4Q99727 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC18.81■□□□□ 0.6
TIMP4Q99727 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC18.81■□□□□ 0.6
TIMP4Q99727 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TIMP4Q99727 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TIMP4Q99727 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TIMP4Q99727 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
TIMP4Q99727 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC18.8■□□□□ 0.6
TIMP4Q99727 AL138781.1-201ENST00000566567 1274 ntBASIC18.8■□□□□ 0.6
TIMP4Q99727 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC18.8■□□□□ 0.6
TIMP4Q99727 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TIMP4Q99727 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TIMP4Q99727 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC18.8■□□□□ 0.6
TIMP4Q99727 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC18.8■□□□□ 0.6
TIMP4Q99727 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TIMP4Q99727 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TIMP4Q99727 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
TIMP4Q99727 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TIMP4Q99727 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TIMP4Q99727 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
TIMP4Q99727 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
TIMP4Q99727 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
TIMP4Q99727 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TIMP4Q99727 AL121603.2-201ENST00000557373 2117 ntBASIC18.79■□□□□ 0.6
TIMP4Q99727 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TIMP4Q99727 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
TIMP4Q99727 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TIMP4Q99727 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC18.79■□□□□ 0.6
TIMP4Q99727 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC18.79■□□□□ 0.6
TIMP4Q99727 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC18.79■□□□□ 0.6
TIMP4Q99727 AL162412.1-201ENST00000567129 965 ntBASIC18.79■□□□□ 0.6
TIMP4Q99727 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC18.79■□□□□ 0.6
TIMP4Q99727 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC18.79■□□□□ 0.6
TIMP4Q99727 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC18.79■□□□□ 0.6
TIMP4Q99727 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC18.79■□□□□ 0.6
TIMP4Q99727 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC18.79■□□□□ 0.6
TIMP4Q99727 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TIMP4Q99727 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC18.79■□□□□ 0.6
TIMP4Q99727 STX5-203ENST00000394690 1568 ntTSL 5 BASIC18.79■□□□□ 0.6
TIMP4Q99727 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
TIMP4Q99727 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
TIMP4Q99727 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TIMP4Q99727 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
TIMP4Q99727 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
TIMP4Q99727 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TIMP4Q99727 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
TIMP4Q99727 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
TIMP4Q99727 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TIMP4Q99727 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TIMP4Q99727 AL512625.2-201ENST00000417533 625 ntBASIC18.78■□□□□ 0.6
TIMP4Q99727 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
TIMP4Q99727 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TIMP4Q99727 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TIMP4Q99727 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.78■□□□□ 0.6
TIMP4Q99727 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC18.78■□□□□ 0.6
TIMP4Q99727 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC18.78■□□□□ 0.6
TIMP4Q99727 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TIMP4Q99727 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TIMP4Q99727 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
TIMP4Q99727 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
TIMP4Q99727 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TIMP4Q99727 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
TIMP4Q99727 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TIMP4Q99727 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TIMP4Q99727 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TIMP4Q99727 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
TIMP4Q99727 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
TIMP4Q99727 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC18.77■□□□□ 0.6
TIMP4Q99727 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TIMP4Q99727 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
TIMP4Q99727 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC18.77■□□□□ 0.6
TIMP4Q99727 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 60.4 ms