Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AP000550.4-202ENST00000639755 178 ntBASIC18.12■□□□□ 0.49
COL12A1Q99715 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL12A1Q99715 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
COL12A1Q99715 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL12A1Q99715 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL12A1Q99715 AC092068.2-201ENST00000590491 1708 ntBASIC18.12■□□□□ 0.49
COL12A1Q99715 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL12A1Q99715 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
COL12A1Q99715 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC18.12■□□□□ 0.49
COL12A1Q99715 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC18.12■□□□□ 0.49
COL12A1Q99715 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.12■□□□□ 0.49
COL12A1Q99715 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL12A1Q99715 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL12A1Q99715 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL12A1Q99715 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL12A1Q99715 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL12A1Q99715 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.12■□□□□ 0.49
COL12A1Q99715 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL12A1Q99715 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL12A1Q99715 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL12A1Q99715 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
COL12A1Q99715 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL12A1Q99715 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC18.11■□□□□ 0.49
COL12A1Q99715 AC092053.2-201ENST00000640557 1818 ntBASIC18.11■□□□□ 0.49
COL12A1Q99715 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.11■□□□□ 0.49
COL12A1Q99715 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC18.11■□□□□ 0.49
COL12A1Q99715 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL12A1Q99715 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL12A1Q99715 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL12A1Q99715 KRT18P68-201ENST00000392293 1000 ntBASIC18.11■□□□□ 0.49
COL12A1Q99715 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC18.11■□□□□ 0.49
COL12A1Q99715 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.11■□□□□ 0.49
COL12A1Q99715 ANOS2P-203ENST00000472227 1816 ntBASIC18.11■□□□□ 0.49
COL12A1Q99715 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
COL12A1Q99715 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC18.11■□□□□ 0.49
COL12A1Q99715 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC18.11■□□□□ 0.49
COL12A1Q99715 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
COL12A1Q99715 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
COL12A1Q99715 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL12A1Q99715 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL12A1Q99715 C11orf96-202ENST00000528572 1834 ntBASIC18.1■□□□□ 0.49
COL12A1Q99715 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
COL12A1Q99715 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.1■□□□□ 0.49
COL12A1Q99715 AC110285.5-201ENST00000611501 352 ntBASIC18.1■□□□□ 0.49
COL12A1Q99715 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL12A1Q99715 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC18.1■□□□□ 0.49
COL12A1Q99715 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL12A1Q99715 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL12A1Q99715 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL12A1Q99715 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC18.09■□□□□ 0.49
COL12A1Q99715 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC18.09■□□□□ 0.49
COL12A1Q99715 CLN6-204ENST00000564752 900 ntTSL 3 BASIC18.09■□□□□ 0.49
COL12A1Q99715 AL121906.2-201ENST00000621597 723 ntBASIC18.09■□□□□ 0.49
COL12A1Q99715 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.09■□□□□ 0.49
COL12A1Q99715 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
COL12A1Q99715 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC18.09■□□□□ 0.49
COL12A1Q99715 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL12A1Q99715 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
COL12A1Q99715 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL12A1Q99715 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC18.09■□□□□ 0.49
COL12A1Q99715 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC18.09■□□□□ 0.49
COL12A1Q99715 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.09■□□□□ 0.49
COL12A1Q99715 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC18.09■□□□□ 0.49
COL12A1Q99715 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL12A1Q99715 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC18.09■□□□□ 0.49
COL12A1Q99715 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC18.09■□□□□ 0.49
COL12A1Q99715 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL12A1Q99715 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
COL12A1Q99715 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL12A1Q99715 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL12A1Q99715 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL12A1Q99715 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC18.09■□□□□ 0.49
COL12A1Q99715 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL12A1Q99715 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL12A1Q99715 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC18.09■□□□□ 0.49
COL12A1Q99715 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC18.09■□□□□ 0.49
COL12A1Q99715 AC105020.6-201ENST00000621523 1217 ntBASIC18.09■□□□□ 0.49
COL12A1Q99715 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL12A1Q99715 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL12A1Q99715 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.49
COL12A1Q99715 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL12A1Q99715 MIR1238-201ENST00000408483 83 ntBASIC18.08■□□□□ 0.49
COL12A1Q99715 ECEL1P2-202ENST00000465689 757 ntBASIC18.08■□□□□ 0.49
COL12A1Q99715 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
COL12A1Q99715 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL12A1Q99715 AC124283.5-201ENST00000624661 1809 ntBASIC18.08■□□□□ 0.49
COL12A1Q99715 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL12A1Q99715 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC18.08■□□□□ 0.48
COL12A1Q99715 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL12A1Q99715 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL12A1Q99715 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL12A1Q99715 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC18.08■□□□□ 0.48
COL12A1Q99715 CLN6-214ENST00000636314 442 ntTSL 3 BASIC18.08■□□□□ 0.48
COL12A1Q99715 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL12A1Q99715 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL12A1Q99715 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL12A1Q99715 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.07■□□□□ 0.48
COL12A1Q99715 AC026471.6-201ENST00000622954 1905 ntBASIC18.07■□□□□ 0.48
COL12A1Q99715 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL12A1Q99715 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms