Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
HMGB4Q8WW32 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HMGB4Q8WW32 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HMGB4Q8WW32 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC20.64■□□□□ 0.89
HMGB4Q8WW32 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
HMGB4Q8WW32 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
HMGB4Q8WW32 KLF2-202ENST00000592003 564 ntTSL 3 BASIC20.64■□□□□ 0.89
HMGB4Q8WW32 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
HMGB4Q8WW32 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HMGB4Q8WW32 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HMGB4Q8WW32 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.63■□□□□ 0.89
HMGB4Q8WW32 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.63■□□□□ 0.89
HMGB4Q8WW32 AC087633.2-202ENST00000565166 1439 ntBASIC20.63■□□□□ 0.89
HMGB4Q8WW32 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HMGB4Q8WW32 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HMGB4Q8WW32 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.63■□□□□ 0.89
HMGB4Q8WW32 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC20.63■□□□□ 0.89
HMGB4Q8WW32 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.63■□□□□ 0.89
HMGB4Q8WW32 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC20.63■□□□□ 0.89
HMGB4Q8WW32 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
HMGB4Q8WW32 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HMGB4Q8WW32 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HMGB4Q8WW32 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.62■□□□□ 0.89
HMGB4Q8WW32 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HMGB4Q8WW32 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.62■□□□□ 0.89
HMGB4Q8WW32 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HMGB4Q8WW32 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
HMGB4Q8WW32 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HMGB4Q8WW32 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HMGB4Q8WW32 ISG20-202ENST00000379224 540 ntTSL 3 BASIC20.62■□□□□ 0.89
HMGB4Q8WW32 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20.62■□□□□ 0.89
HMGB4Q8WW32 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC20.62■□□□□ 0.89
HMGB4Q8WW32 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HMGB4Q8WW32 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.62■□□□□ 0.89
HMGB4Q8WW32 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HMGB4Q8WW32 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HMGB4Q8WW32 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
HMGB4Q8WW32 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HMGB4Q8WW32 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HMGB4Q8WW32 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HMGB4Q8WW32 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HMGB4Q8WW32 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HMGB4Q8WW32 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.62■□□□□ 0.89
HMGB4Q8WW32 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
HMGB4Q8WW32 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HMGB4Q8WW32 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HMGB4Q8WW32 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGB4Q8WW32 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGB4Q8WW32 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
HMGB4Q8WW32 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGB4Q8WW32 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGB4Q8WW32 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HMGB4Q8WW32 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGB4Q8WW32 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGB4Q8WW32 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HMGB4Q8WW32 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGB4Q8WW32 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC20.61■□□□□ 0.89
HMGB4Q8WW32 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HMGB4Q8WW32 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGB4Q8WW32 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGB4Q8WW32 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.61■□□□□ 0.89
HMGB4Q8WW32 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.61■□□□□ 0.89
HMGB4Q8WW32 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGB4Q8WW32 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
HMGB4Q8WW32 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGB4Q8WW32 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HMGB4Q8WW32 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
HMGB4Q8WW32 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.6■□□□□ 0.89
HMGB4Q8WW32 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.6■□□□□ 0.89
HMGB4Q8WW32 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGB4Q8WW32 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGB4Q8WW32 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.6■□□□□ 0.89
HMGB4Q8WW32 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HMGB4Q8WW32 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC20.6■□□□□ 0.89
HMGB4Q8WW32 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC20.6■□□□□ 0.89
HMGB4Q8WW32 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGB4Q8WW32 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGB4Q8WW32 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGB4Q8WW32 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HMGB4Q8WW32 THEM4-205ENST00000489410 643 ntTSL 2 BASIC20.6■□□□□ 0.89
HMGB4Q8WW32 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HMGB4Q8WW32 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
HMGB4Q8WW32 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HMGB4Q8WW32 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
HMGB4Q8WW32 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.6■□□□□ 0.89
HMGB4Q8WW32 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.6■□□□□ 0.89
HMGB4Q8WW32 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGB4Q8WW32 AC242852.2-201ENST00000615738 1807 ntBASIC20.6■□□□□ 0.89
HMGB4Q8WW32 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
HMGB4Q8WW32 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB4Q8WW32 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB4Q8WW32 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB4Q8WW32 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC20.59■□□□□ 0.89
HMGB4Q8WW32 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB4Q8WW32 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC20.59■□□□□ 0.89
HMGB4Q8WW32 PGM5P4-201ENST00000421970 445 ntBASIC20.59■□□□□ 0.89
HMGB4Q8WW32 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB4Q8WW32 GXYLT1P3-201ENST00000453058 1193 ntBASIC20.59■□□□□ 0.89
HMGB4Q8WW32 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB4Q8WW32 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms