Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.05■□□□□ 0.8
LMX1AQ8TE12 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LMX1AQ8TE12 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.05■□□□□ 0.8
LMX1AQ8TE12 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.04■□□□□ 0.8
LMX1AQ8TE12 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.04■□□□□ 0.8
LMX1AQ8TE12 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LMX1AQ8TE12 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LMX1AQ8TE12 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LMX1AQ8TE12 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LMX1AQ8TE12 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
LMX1AQ8TE12 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC20.04■□□□□ 0.8
LMX1AQ8TE12 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
LMX1AQ8TE12 RPS2P4-201ENST00000476944 856 ntBASIC20.04■□□□□ 0.8
LMX1AQ8TE12 C1QBPP2-201ENST00000528754 825 ntBASIC20.04■□□□□ 0.8
LMX1AQ8TE12 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC20.04■□□□□ 0.8
LMX1AQ8TE12 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC20.04■□□□□ 0.8
LMX1AQ8TE12 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC20.04■□□□□ 0.8
LMX1AQ8TE12 AL359736.2-201ENST00000621992 437 ntBASIC20.04■□□□□ 0.8
LMX1AQ8TE12 FAM197Y4-202ENST00000622692 608 ntBASIC20.04■□□□□ 0.8
LMX1AQ8TE12 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LMX1AQ8TE12 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LMX1AQ8TE12 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.04■□□□□ 0.8
LMX1AQ8TE12 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LMX1AQ8TE12 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.04■□□□□ 0.8
LMX1AQ8TE12 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LMX1AQ8TE12 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.04■□□□□ 0.8
LMX1AQ8TE12 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LMX1AQ8TE12 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
LMX1AQ8TE12 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LMX1AQ8TE12 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LMX1AQ8TE12 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
LMX1AQ8TE12 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
LMX1AQ8TE12 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.03■□□□□ 0.8
LMX1AQ8TE12 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
LMX1AQ8TE12 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.03■□□□□ 0.8
LMX1AQ8TE12 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC20.03■□□□□ 0.8
LMX1AQ8TE12 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LMX1AQ8TE12 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC20.03■□□□□ 0.8
LMX1AQ8TE12 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.03■□□□□ 0.8
LMX1AQ8TE12 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LMX1AQ8TE12 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LMX1AQ8TE12 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.03■□□□□ 0.8
LMX1AQ8TE12 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.03■□□□□ 0.8
LMX1AQ8TE12 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
LMX1AQ8TE12 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LMX1AQ8TE12 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LMX1AQ8TE12 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LMX1AQ8TE12 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LMX1AQ8TE12 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.02■□□□□ 0.8
LMX1AQ8TE12 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LMX1AQ8TE12 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
LMX1AQ8TE12 UBE2SP1-201ENST00000450587 669 ntBASIC20.02■□□□□ 0.8
LMX1AQ8TE12 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.02■□□□□ 0.8
LMX1AQ8TE12 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LMX1AQ8TE12 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC20.02■□□□□ 0.8
LMX1AQ8TE12 AC233263.1-201ENST00000578059 224 ntBASIC20.02■□□□□ 0.8
LMX1AQ8TE12 USP36-216ENST00000589424 970 ntTSL 5 BASIC20.02■□□□□ 0.8
LMX1AQ8TE12 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LMX1AQ8TE12 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.02■□□□□ 0.8
LMX1AQ8TE12 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
LMX1AQ8TE12 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
LMX1AQ8TE12 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
LMX1AQ8TE12 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.01■□□□□ 0.79
LMX1AQ8TE12 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.01■□□□□ 0.79
LMX1AQ8TE12 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
LMX1AQ8TE12 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LMX1AQ8TE12 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
LMX1AQ8TE12 RPPH1-201ENST00000516869 333 ntBASIC20.01■□□□□ 0.79
LMX1AQ8TE12 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC20.01■□□□□ 0.79
LMX1AQ8TE12 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC20.01■□□□□ 0.79
LMX1AQ8TE12 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.01■□□□□ 0.79
LMX1AQ8TE12 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.01■□□□□ 0.79
LMX1AQ8TE12 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
LMX1AQ8TE12 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LMX1AQ8TE12 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC20.01■□□□□ 0.79
LMX1AQ8TE12 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC20.01■□□□□ 0.79
LMX1AQ8TE12 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.01■□□□□ 0.79
LMX1AQ8TE12 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LMX1AQ8TE12 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20■□□□□ 0.79
LMX1AQ8TE12 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LMX1AQ8TE12 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
LMX1AQ8TE12 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
LMX1AQ8TE12 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LMX1AQ8TE12 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20■□□□□ 0.79
LMX1AQ8TE12 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20■□□□□ 0.79
LMX1AQ8TE12 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20■□□□□ 0.79
LMX1AQ8TE12 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
LMX1AQ8TE12 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
LMX1AQ8TE12 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
LMX1AQ8TE12 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LMX1AQ8TE12 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC20■□□□□ 0.79
LMX1AQ8TE12 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC20■□□□□ 0.79
LMX1AQ8TE12 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC20■□□□□ 0.79
LMX1AQ8TE12 AL356652.1-201ENST00000615962 565 ntBASIC20■□□□□ 0.79
LMX1AQ8TE12 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LMX1AQ8TE12 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20■□□□□ 0.79
LMX1AQ8TE12 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC20■□□□□ 0.79
LMX1AQ8TE12 MME-217ENST00000616757 1315 ntTSL 5 BASIC20■□□□□ 0.79
LMX1AQ8TE12 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LMX1AQ8TE12 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms