Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
NUP54Q7Z3B4 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
NUP54Q7Z3B4 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
NUP54Q7Z3B4 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
NUP54Q7Z3B4 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
NUP54Q7Z3B4 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
NUP54Q7Z3B4 AL512625.2-201ENST00000417533 625 ntBASIC18.96■□□□□ 0.63
NUP54Q7Z3B4 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC18.96■□□□□ 0.63
NUP54Q7Z3B4 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
NUP54Q7Z3B4 NCF1B-203ENST00000435988 1254 ntBASIC18.96■□□□□ 0.63
NUP54Q7Z3B4 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC18.96■□□□□ 0.63
NUP54Q7Z3B4 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
NUP54Q7Z3B4 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC18.96■□□□□ 0.63
NUP54Q7Z3B4 AC016405.3-201ENST00000607710 860 ntBASIC18.96■□□□□ 0.63
NUP54Q7Z3B4 AL121832.2-201ENST00000610979 668 ntBASIC18.96■□□□□ 0.63
NUP54Q7Z3B4 AL050303.2-201ENST00000619798 666 ntBASIC18.96■□□□□ 0.63
NUP54Q7Z3B4 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC18.96■□□□□ 0.63
NUP54Q7Z3B4 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
NUP54Q7Z3B4 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC18.95■□□□□ 0.62
NUP54Q7Z3B4 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
NUP54Q7Z3B4 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
NUP54Q7Z3B4 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
NUP54Q7Z3B4 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
NUP54Q7Z3B4 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
NUP54Q7Z3B4 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
NUP54Q7Z3B4 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
NUP54Q7Z3B4 AF201337.1-201ENST00000520239 748 ntBASIC18.95■□□□□ 0.62
NUP54Q7Z3B4 OAS3-207ENST00000551007 998 ntTSL 2 BASIC18.95■□□□□ 0.62
NUP54Q7Z3B4 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC18.95■□□□□ 0.62
NUP54Q7Z3B4 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC18.95■□□□□ 0.62
NUP54Q7Z3B4 AC011484.1-201ENST00000377652 1995 ntBASIC18.95■□□□□ 0.62
NUP54Q7Z3B4 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
NUP54Q7Z3B4 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC18.95■□□□□ 0.62
NUP54Q7Z3B4 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC18.95■□□□□ 0.62
NUP54Q7Z3B4 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC18.95■□□□□ 0.62
NUP54Q7Z3B4 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
NUP54Q7Z3B4 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NUP54Q7Z3B4 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
NUP54Q7Z3B4 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC18.94■□□□□ 0.62
NUP54Q7Z3B4 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
NUP54Q7Z3B4 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NUP54Q7Z3B4 VMO1-204ENST00000441199 741 ntTSL 2 BASIC18.94■□□□□ 0.62
NUP54Q7Z3B4 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC18.94■□□□□ 0.62
NUP54Q7Z3B4 AC083906.2-201ENST00000511578 360 ntBASIC18.94■□□□□ 0.62
NUP54Q7Z3B4 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
NUP54Q7Z3B4 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
NUP54Q7Z3B4 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC18.94■□□□□ 0.62
NUP54Q7Z3B4 GXYLT1P5-201ENST00000614548 1189 ntBASIC18.94■□□□□ 0.62
NUP54Q7Z3B4 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC18.94■□□□□ 0.62
NUP54Q7Z3B4 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
NUP54Q7Z3B4 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.94■□□□□ 0.62
NUP54Q7Z3B4 AF106564.1-201ENST00000607058 2553 ntBASIC18.94■□□□□ 0.62
NUP54Q7Z3B4 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC18.94■□□□□ 0.62
NUP54Q7Z3B4 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NUP54Q7Z3B4 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC18.94■□□□□ 0.62
NUP54Q7Z3B4 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
NUP54Q7Z3B4 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
NUP54Q7Z3B4 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
NUP54Q7Z3B4 USP48-205ENST00000421625 2818 ntTSL 2 BASIC18.93■□□□□ 0.62
NUP54Q7Z3B4 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
NUP54Q7Z3B4 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
NUP54Q7Z3B4 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
NUP54Q7Z3B4 GPX1P1-201ENST00000388829 606 ntBASIC18.93■□□□□ 0.62
NUP54Q7Z3B4 MAP2K4P1-201ENST00000438453 1195 ntBASIC18.93■□□□□ 0.62
NUP54Q7Z3B4 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC18.93■□□□□ 0.62
NUP54Q7Z3B4 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
NUP54Q7Z3B4 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC18.93■□□□□ 0.62
NUP54Q7Z3B4 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC18.93■□□□□ 0.62
NUP54Q7Z3B4 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.93■□□□□ 0.62
NUP54Q7Z3B4 AC121338.2-201ENST00000622535 1744 ntBASIC18.93■□□□□ 0.62
NUP54Q7Z3B4 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
NUP54Q7Z3B4 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC18.93■□□□□ 0.62
NUP54Q7Z3B4 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
NUP54Q7Z3B4 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
NUP54Q7Z3B4 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
NUP54Q7Z3B4 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
NUP54Q7Z3B4 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC18.93■□□□□ 0.62
NUP54Q7Z3B4 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
NUP54Q7Z3B4 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC18.92■□□□□ 0.62
NUP54Q7Z3B4 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NUP54Q7Z3B4 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
NUP54Q7Z3B4 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
NUP54Q7Z3B4 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NUP54Q7Z3B4 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
NUP54Q7Z3B4 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
NUP54Q7Z3B4 METTL15-202ENST00000403099 795 ntTSL 5 BASIC18.92■□□□□ 0.62
NUP54Q7Z3B4 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC18.92■□□□□ 0.62
NUP54Q7Z3B4 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC18.92■□□□□ 0.62
NUP54Q7Z3B4 AC105036.2-201ENST00000569468 176 ntBASIC18.92■□□□□ 0.62
NUP54Q7Z3B4 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC18.92■□□□□ 0.62
NUP54Q7Z3B4 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
NUP54Q7Z3B4 AC100791.3-201ENST00000617619 330 ntBASIC18.92■□□□□ 0.62
NUP54Q7Z3B4 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC18.92■□□□□ 0.62
NUP54Q7Z3B4 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC18.92■□□□□ 0.62
NUP54Q7Z3B4 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
NUP54Q7Z3B4 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC18.92■□□□□ 0.62
NUP54Q7Z3B4 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
NUP54Q7Z3B4 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC18.92■□□□□ 0.62
NUP54Q7Z3B4 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC18.92■□□□□ 0.62
NUP54Q7Z3B4 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms