Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.37■□□□□ 0.85
ZNF549Q6P9A3 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.37■□□□□ 0.85
ZNF549Q6P9A3 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
ZNF549Q6P9A3 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC20.37■□□□□ 0.85
ZNF549Q6P9A3 RARRES2P6-201ENST00000567333 442 ntBASIC20.37■□□□□ 0.85
ZNF549Q6P9A3 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC20.37■□□□□ 0.85
ZNF549Q6P9A3 MYCNOS-205ENST00000641950 531 ntBASIC20.37■□□□□ 0.85
ZNF549Q6P9A3 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.37■□□□□ 0.85
ZNF549Q6P9A3 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF549Q6P9A3 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF549Q6P9A3 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF549Q6P9A3 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF549Q6P9A3 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF549Q6P9A3 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.36■□□□□ 0.85
ZNF549Q6P9A3 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.36■□□□□ 0.85
ZNF549Q6P9A3 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
ZNF549Q6P9A3 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.36■□□□□ 0.85
ZNF549Q6P9A3 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF549Q6P9A3 AC020907.5-201ENST00000624372 1936 ntBASIC20.36■□□□□ 0.85
ZNF549Q6P9A3 STX7-201ENST00000367937 1090 ntTSL 5 BASIC20.36■□□□□ 0.85
ZNF549Q6P9A3 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC20.36■□□□□ 0.85
ZNF549Q6P9A3 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.36■□□□□ 0.85
ZNF549Q6P9A3 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC20.36■□□□□ 0.85
ZNF549Q6P9A3 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC20.36■□□□□ 0.85
ZNF549Q6P9A3 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF549Q6P9A3 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF549Q6P9A3 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.35■□□□□ 0.85
ZNF549Q6P9A3 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF549Q6P9A3 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF549Q6P9A3 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.35■□□□□ 0.85
ZNF549Q6P9A3 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF549Q6P9A3 PARP1-202ENST00000366792 553 ntTSL 3 BASIC20.35■□□□□ 0.85
ZNF549Q6P9A3 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC20.35■□□□□ 0.85
ZNF549Q6P9A3 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.35■□□□□ 0.85
ZNF549Q6P9A3 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.35■□□□□ 0.85
ZNF549Q6P9A3 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF549Q6P9A3 DBI-210ENST00000542275 757 ntTSL 5 BASIC20.35■□□□□ 0.85
ZNF549Q6P9A3 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC20.35■□□□□ 0.85
ZNF549Q6P9A3 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC20.35■□□□□ 0.85
ZNF549Q6P9A3 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF549Q6P9A3 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF549Q6P9A3 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.35■□□□□ 0.85
ZNF549Q6P9A3 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF549Q6P9A3 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF549Q6P9A3 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.35■□□□□ 0.85
ZNF549Q6P9A3 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
ZNF549Q6P9A3 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
ZNF549Q6P9A3 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
ZNF549Q6P9A3 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF549Q6P9A3 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.34■□□□□ 0.85
ZNF549Q6P9A3 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF549Q6P9A3 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF549Q6P9A3 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF549Q6P9A3 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF549Q6P9A3 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF549Q6P9A3 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF549Q6P9A3 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF549Q6P9A3 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.34■□□□□ 0.85
ZNF549Q6P9A3 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC20.34■□□□□ 0.85
ZNF549Q6P9A3 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC20.34■□□□□ 0.85
ZNF549Q6P9A3 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.34■□□□□ 0.85
ZNF549Q6P9A3 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.34■□□□□ 0.85
ZNF549Q6P9A3 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF549Q6P9A3 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF549Q6P9A3 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF549Q6P9A3 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF549Q6P9A3 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.34■□□□□ 0.85
ZNF549Q6P9A3 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
ZNF549Q6P9A3 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.33■□□□□ 0.85
ZNF549Q6P9A3 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
ZNF549Q6P9A3 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
ZNF549Q6P9A3 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
ZNF549Q6P9A3 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
ZNF549Q6P9A3 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
ZNF549Q6P9A3 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.33■□□□□ 0.85
ZNF549Q6P9A3 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
ZNF549Q6P9A3 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
ZNF549Q6P9A3 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC20.33■□□□□ 0.85
ZNF549Q6P9A3 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.33■□□□□ 0.85
ZNF549Q6P9A3 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC20.33■□□□□ 0.85
ZNF549Q6P9A3 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.33■□□□□ 0.84
ZNF549Q6P9A3 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.33■□□□□ 0.84
ZNF549Q6P9A3 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.33■□□□□ 0.84
ZNF549Q6P9A3 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
ZNF549Q6P9A3 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.33■□□□□ 0.84
ZNF549Q6P9A3 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
ZNF549Q6P9A3 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
ZNF549Q6P9A3 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.33■□□□□ 0.84
ZNF549Q6P9A3 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
ZNF549Q6P9A3 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
ZNF549Q6P9A3 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF549Q6P9A3 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF549Q6P9A3 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF549Q6P9A3 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.32■□□□□ 0.84
ZNF549Q6P9A3 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.32■□□□□ 0.84
ZNF549Q6P9A3 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
ZNF549Q6P9A3 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.32■□□□□ 0.84
ZNF549Q6P9A3 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF549Q6P9A3 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF549Q6P9A3 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms