Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC19.7■□□□□ 0.74
COL28A1Q2UY09 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
COL28A1Q2UY09 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL28A1Q2UY09 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL28A1Q2UY09 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL28A1Q2UY09 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL28A1Q2UY09 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL28A1Q2UY09 PNMA6B-201ENST00000538162 1200 ntBASIC19.7■□□□□ 0.74
COL28A1Q2UY09 AL049597.2-201ENST00000565575 961 ntBASIC19.7■□□□□ 0.74
COL28A1Q2UY09 EEF1DP3-203ENST00000566025 782 ntBASIC19.7■□□□□ 0.74
COL28A1Q2UY09 AC120498.10-201ENST00000621827 505 ntBASIC19.7■□□□□ 0.74
COL28A1Q2UY09 AL590326.2-201ENST00000625139 305 ntBASIC19.7■□□□□ 0.74
COL28A1Q2UY09 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL28A1Q2UY09 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL28A1Q2UY09 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC19.7■□□□□ 0.74
COL28A1Q2UY09 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
COL28A1Q2UY09 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL28A1Q2UY09 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
COL28A1Q2UY09 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.69■□□□□ 0.74
COL28A1Q2UY09 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.69■□□□□ 0.74
COL28A1Q2UY09 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL28A1Q2UY09 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC19.69■□□□□ 0.74
COL28A1Q2UY09 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
COL28A1Q2UY09 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
COL28A1Q2UY09 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.69■□□□□ 0.74
COL28A1Q2UY09 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL28A1Q2UY09 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC19.69■□□□□ 0.74
COL28A1Q2UY09 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC19.69■□□□□ 0.74
COL28A1Q2UY09 LSR-203ENST00000360798 1963 ntTSL 2 BASIC19.69■□□□□ 0.74
COL28A1Q2UY09 KRT17P1-201ENST00000399211 1546 ntBASIC19.69■□□□□ 0.74
COL28A1Q2UY09 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL28A1Q2UY09 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL28A1Q2UY09 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL28A1Q2UY09 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC19.69■□□□□ 0.74
COL28A1Q2UY09 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL28A1Q2UY09 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL28A1Q2UY09 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL28A1Q2UY09 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.69■□□□□ 0.74
COL28A1Q2UY09 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL28A1Q2UY09 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL28A1Q2UY09 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL28A1Q2UY09 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL28A1Q2UY09 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC19.68■□□□□ 0.74
COL28A1Q2UY09 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL28A1Q2UY09 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC19.68■□□□□ 0.74
COL28A1Q2UY09 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL28A1Q2UY09 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.68■□□□□ 0.74
COL28A1Q2UY09 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC19.68■□□□□ 0.74
COL28A1Q2UY09 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL28A1Q2UY09 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC19.68■□□□□ 0.74
COL28A1Q2UY09 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC19.68■□□□□ 0.74
COL28A1Q2UY09 MIR4785-201ENST00000585005 73 ntBASIC19.68■□□□□ 0.74
COL28A1Q2UY09 AC053503.5-201ENST00000601508 636 ntBASIC19.68■□□□□ 0.74
COL28A1Q2UY09 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL28A1Q2UY09 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
COL28A1Q2UY09 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
COL28A1Q2UY09 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL28A1Q2UY09 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL28A1Q2UY09 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL28A1Q2UY09 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL28A1Q2UY09 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC19.67■□□□□ 0.74
COL28A1Q2UY09 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC19.67■□□□□ 0.74
COL28A1Q2UY09 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL28A1Q2UY09 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL28A1Q2UY09 AC092053.2-201ENST00000640557 1818 ntBASIC19.67■□□□□ 0.74
COL28A1Q2UY09 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL28A1Q2UY09 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL28A1Q2UY09 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL28A1Q2UY09 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL28A1Q2UY09 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL28A1Q2UY09 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
COL28A1Q2UY09 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
COL28A1Q2UY09 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
COL28A1Q2UY09 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC19.67■□□□□ 0.74
COL28A1Q2UY09 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL28A1Q2UY09 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL28A1Q2UY09 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.67■□□□□ 0.74
COL28A1Q2UY09 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL28A1Q2UY09 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.67■□□□□ 0.74
COL28A1Q2UY09 TPM1-226ENST00000560959 925 ntTSL 2 BASIC19.67■□□□□ 0.74
COL28A1Q2UY09 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC19.67■□□□□ 0.74
COL28A1Q2UY09 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC19.67■□□□□ 0.74
COL28A1Q2UY09 RMI2-205ENST00000576027 818 ntTSL 2 BASIC19.67■□□□□ 0.74
COL28A1Q2UY09 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC19.67■□□□□ 0.74
COL28A1Q2UY09 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.67■□□□□ 0.74
COL28A1Q2UY09 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
COL28A1Q2UY09 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
COL28A1Q2UY09 AL049637.2-201ENST00000641778 930 ntBASIC19.67■□□□□ 0.74
COL28A1Q2UY09 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL28A1Q2UY09 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL28A1Q2UY09 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
COL28A1Q2UY09 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.67■□□□□ 0.74
COL28A1Q2UY09 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL28A1Q2UY09 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL28A1Q2UY09 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL28A1Q2UY09 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL28A1Q2UY09 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL28A1Q2UY09 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL28A1Q2UY09 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL28A1Q2UY09 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms