Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC21.12■□□□□ 0.97
NEK3P51956 AL109923.1-201ENST00000618799 583 ntBASIC21.12■□□□□ 0.97
NEK3P51956 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC21.12■□□□□ 0.97
NEK3P51956 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NEK3P51956 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
NEK3P51956 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NEK3P51956 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NEK3P51956 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
NEK3P51956 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC21.12■□□□□ 0.97
NEK3P51956 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
NEK3P51956 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
NEK3P51956 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NEK3P51956 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NEK3P51956 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NEK3P51956 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
NEK3P51956 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NEK3P51956 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
NEK3P51956 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NEK3P51956 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NEK3P51956 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC21.11■□□□□ 0.97
NEK3P51956 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC21.11■□□□□ 0.97
NEK3P51956 AL121832.2-201ENST00000610979 668 ntBASIC21.11■□□□□ 0.97
NEK3P51956 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NEK3P51956 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC21.11■□□□□ 0.97
NEK3P51956 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NEK3P51956 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NEK3P51956 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
NEK3P51956 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC21.1■□□□□ 0.97
NEK3P51956 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NEK3P51956 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC21.1■□□□□ 0.97
NEK3P51956 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NEK3P51956 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC21.1■□□□□ 0.97
NEK3P51956 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
NEK3P51956 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NEK3P51956 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
NEK3P51956 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
NEK3P51956 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.1■□□□□ 0.97
NEK3P51956 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NEK3P51956 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC21.1■□□□□ 0.97
NEK3P51956 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC21.1■□□□□ 0.97
NEK3P51956 AC007322.4-201ENST00000509611 723 ntBASIC21.1■□□□□ 0.97
NEK3P51956 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC21.1■□□□□ 0.97
NEK3P51956 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC21.1■□□□□ 0.97
NEK3P51956 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
NEK3P51956 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
NEK3P51956 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NEK3P51956 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
NEK3P51956 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NEK3P51956 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
NEK3P51956 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
NEK3P51956 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
NEK3P51956 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.09■□□□□ 0.97
NEK3P51956 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NEK3P51956 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
NEK3P51956 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC21.09■□□□□ 0.97
NEK3P51956 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NEK3P51956 APTR-203ENST00000430801 583 ntTSL 5 BASIC21.09■□□□□ 0.97
NEK3P51956 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
NEK3P51956 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
NEK3P51956 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
NEK3P51956 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC21.09■□□□□ 0.97
NEK3P51956 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NEK3P51956 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC21.09■□□□□ 0.97
NEK3P51956 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC21.09■□□□□ 0.97
NEK3P51956 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
NEK3P51956 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
NEK3P51956 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NEK3P51956 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
NEK3P51956 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.97
NEK3P51956 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NEK3P51956 FGF8-207ENST00000618991 856 ntTSL 3 BASIC21.08■□□□□ 0.97
NEK3P51956 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC21.08■□□□□ 0.96
NEK3P51956 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
NEK3P51956 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
NEK3P51956 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC21.07■□□□□ 0.96
NEK3P51956 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NEK3P51956 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC21.07■□□□□ 0.96
NEK3P51956 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NEK3P51956 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NEK3P51956 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
NEK3P51956 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
NEK3P51956 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC21.07■□□□□ 0.96
NEK3P51956 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NEK3P51956 AC083906.2-201ENST00000511578 360 ntBASIC21.07■□□□□ 0.96
NEK3P51956 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
NEK3P51956 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NEK3P51956 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
NEK3P51956 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
NEK3P51956 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NEK3P51956 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NEK3P51956 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC21.07■□□□□ 0.96
NEK3P51956 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
NEK3P51956 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NEK3P51956 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC21.06■□□□□ 0.96
NEK3P51956 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21.06■□□□□ 0.96
NEK3P51956 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NEK3P51956 AC068338.2-201ENST00000563278 1430 ntBASIC21.06■□□□□ 0.96
NEK3P51956 RBM17P2-201ENST00000616397 1405 ntBASIC21.06■□□□□ 0.96
NEK3P51956 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC21.06■□□□□ 0.96
NEK3P51956 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms