Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 KRT17P2-201ENST00000300992 1314 ntBASIC19.88■□□□□ 0.77
COL5A1P20908 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC19.88■□□□□ 0.77
COL5A1P20908 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL5A1P20908 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
COL5A1P20908 ABHD17AP6-201ENST00000458502 1044 ntBASIC19.88■□□□□ 0.77
COL5A1P20908 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC19.88■□□□□ 0.77
COL5A1P20908 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC19.88■□□□□ 0.77
COL5A1P20908 MIR4785-201ENST00000585005 73 ntBASIC19.88■□□□□ 0.77
COL5A1P20908 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL5A1P20908 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.88■□□□□ 0.77
COL5A1P20908 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.88■□□□□ 0.77
COL5A1P20908 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL5A1P20908 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL5A1P20908 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL5A1P20908 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL5A1P20908 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL5A1P20908 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC19.87■□□□□ 0.77
COL5A1P20908 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL5A1P20908 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
COL5A1P20908 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL5A1P20908 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC19.87■□□□□ 0.77
COL5A1P20908 AC005829.2-201ENST00000571422 1056 ntBASIC19.87■□□□□ 0.77
COL5A1P20908 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC19.87■□□□□ 0.77
COL5A1P20908 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC19.87■□□□□ 0.77
COL5A1P20908 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC19.87■□□□□ 0.77
COL5A1P20908 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC19.87■□□□□ 0.77
COL5A1P20908 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL5A1P20908 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL5A1P20908 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC19.87■□□□□ 0.77
COL5A1P20908 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL5A1P20908 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL5A1P20908 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL5A1P20908 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL5A1P20908 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC19.86■□□□□ 0.77
COL5A1P20908 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL5A1P20908 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL5A1P20908 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL5A1P20908 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC19.86■□□□□ 0.77
COL5A1P20908 RER1-204ENST00000378518 522 ntTSL 3 BASIC19.86■□□□□ 0.77
COL5A1P20908 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL5A1P20908 RARRES2P10-201ENST00000564312 460 ntBASIC19.86■□□□□ 0.77
COL5A1P20908 AC110285.5-201ENST00000611501 352 ntBASIC19.86■□□□□ 0.77
COL5A1P20908 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL5A1P20908 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.86■□□□□ 0.77
COL5A1P20908 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL5A1P20908 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL5A1P20908 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL5A1P20908 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL5A1P20908 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL5A1P20908 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC19.86■□□□□ 0.77
COL5A1P20908 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC19.86■□□□□ 0.77
COL5A1P20908 AP001412.1-201ENST00000608405 714 ntBASIC19.86■□□□□ 0.77
COL5A1P20908 AC012306.2-201ENST00000609350 630 ntBASIC19.86■□□□□ 0.77
COL5A1P20908 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
COL5A1P20908 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL5A1P20908 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL5A1P20908 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
COL5A1P20908 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL5A1P20908 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
COL5A1P20908 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
COL5A1P20908 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
COL5A1P20908 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC19.85■□□□□ 0.77
COL5A1P20908 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC19.85■□□□□ 0.77
COL5A1P20908 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC19.85■□□□□ 0.77
COL5A1P20908 PPOX-219ENST00000544598 813 ntTSL 2 BASIC19.85■□□□□ 0.77
COL5A1P20908 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.85■□□□□ 0.77
COL5A1P20908 C2orf69P4-201ENST00000565394 541 ntBASIC19.85■□□□□ 0.77
COL5A1P20908 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC19.85■□□□□ 0.77
COL5A1P20908 AC113410.3-201ENST00000623366 203 ntBASIC19.85■□□□□ 0.77
COL5A1P20908 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.85■□□□□ 0.77
COL5A1P20908 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.85■□□□□ 0.77
COL5A1P20908 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL5A1P20908 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC19.85■□□□□ 0.77
COL5A1P20908 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL5A1P20908 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL5A1P20908 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL5A1P20908 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL5A1P20908 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL5A1P20908 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL5A1P20908 KRASP1-201ENST00000407852 552 ntBASIC19.84■□□□□ 0.77
COL5A1P20908 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC19.84■□□□□ 0.77
COL5A1P20908 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL5A1P20908 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC19.84■□□□□ 0.77
COL5A1P20908 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
COL5A1P20908 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.84■□□□□ 0.77
COL5A1P20908 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
COL5A1P20908 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL5A1P20908 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC19.84■□□□□ 0.77
COL5A1P20908 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
COL5A1P20908 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC19.83■□□□□ 0.77
COL5A1P20908 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
COL5A1P20908 AC087499.1-201ENST00000418141 1075 ntBASIC19.83■□□□□ 0.77
COL5A1P20908 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
COL5A1P20908 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC19.83■□□□□ 0.77
COL5A1P20908 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
COL5A1P20908 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.77
COL5A1P20908 AL023875.1-201ENST00000640777 796 ntBASIC19.83■□□□□ 0.77
COL5A1P20908 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC19.83■□□□□ 0.77
COL5A1P20908 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.83■□□□□ 0.77
COL5A1P20908 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms