Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC23.86■■□□□ 1.41
CTDNEP1O95476 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC23.86■■□□□ 1.41
CTDNEP1O95476 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
CTDNEP1O95476 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CTDNEP1O95476 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC23.86■■□□□ 1.41
CTDNEP1O95476 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
CTDNEP1O95476 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CTDNEP1O95476 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CTDNEP1O95476 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC23.85■■□□□ 1.41
CTDNEP1O95476 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC23.85■■□□□ 1.41
CTDNEP1O95476 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC23.85■■□□□ 1.41
CTDNEP1O95476 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC23.85■■□□□ 1.41
CTDNEP1O95476 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC23.85■■□□□ 1.41
CTDNEP1O95476 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC23.85■■□□□ 1.41
CTDNEP1O95476 AC007322.3-201ENST00000426526 701 ntBASIC23.85■■□□□ 1.41
CTDNEP1O95476 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC23.85■■□□□ 1.41
CTDNEP1O95476 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC23.85■■□□□ 1.41
CTDNEP1O95476 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC23.85■■□□□ 1.41
CTDNEP1O95476 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC23.85■■□□□ 1.41
CTDNEP1O95476 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
CTDNEP1O95476 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CTDNEP1O95476 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC23.85■■□□□ 1.41
CTDNEP1O95476 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CTDNEP1O95476 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CTDNEP1O95476 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC23.84■■□□□ 1.41
CTDNEP1O95476 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CTDNEP1O95476 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC23.84■■□□□ 1.41
CTDNEP1O95476 SAPCD2P1-201ENST00000395413 1184 ntBASIC23.84■■□□□ 1.41
CTDNEP1O95476 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC23.84■■□□□ 1.41
CTDNEP1O95476 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
CTDNEP1O95476 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC23.84■■□□□ 1.41
CTDNEP1O95476 GXYLT1P2-201ENST00000433312 1230 ntBASIC23.84■■□□□ 1.41
CTDNEP1O95476 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC23.84■■□□□ 1.41
CTDNEP1O95476 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CTDNEP1O95476 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC23.84■■□□□ 1.41
CTDNEP1O95476 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC23.84■■□□□ 1.41
CTDNEP1O95476 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CTDNEP1O95476 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CTDNEP1O95476 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC23.84■■□□□ 1.41
CTDNEP1O95476 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CTDNEP1O95476 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CTDNEP1O95476 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CTDNEP1O95476 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
CTDNEP1O95476 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CTDNEP1O95476 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CTDNEP1O95476 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CTDNEP1O95476 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CTDNEP1O95476 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CTDNEP1O95476 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CTDNEP1O95476 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CTDNEP1O95476 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC23.83■■□□□ 1.41
CTDNEP1O95476 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CTDNEP1O95476 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
CTDNEP1O95476 CNN2P6-201ENST00000439038 900 ntBASIC23.83■■□□□ 1.41
CTDNEP1O95476 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC23.83■■□□□ 1.41
CTDNEP1O95476 DUX4L16-201ENST00000555130 1264 ntBASIC23.83■■□□□ 1.41
CTDNEP1O95476 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.41
CTDNEP1O95476 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC23.83■■□□□ 1.41
CTDNEP1O95476 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CTDNEP1O95476 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC23.83■■□□□ 1.41
CTDNEP1O95476 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.4
CTDNEP1O95476 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
CTDNEP1O95476 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
CTDNEP1O95476 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC23.82■■□□□ 1.4
CTDNEP1O95476 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CTDNEP1O95476 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC23.82■■□□□ 1.4
CTDNEP1O95476 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC23.82■■□□□ 1.4
CTDNEP1O95476 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CTDNEP1O95476 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
CTDNEP1O95476 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC23.82■■□□□ 1.4
CTDNEP1O95476 VMO1-204ENST00000441199 741 ntTSL 2 BASIC23.82■■□□□ 1.4
CTDNEP1O95476 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC23.82■■□□□ 1.4
CTDNEP1O95476 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CTDNEP1O95476 AC016405.3-201ENST00000607710 860 ntBASIC23.82■■□□□ 1.4
CTDNEP1O95476 MIR5787-201ENST00000611784 55 ntBASIC23.82■■□□□ 1.4
CTDNEP1O95476 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CTDNEP1O95476 AL391422.3-201ENST00000603791 2761 ntBASIC23.82■■□□□ 1.4
CTDNEP1O95476 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CTDNEP1O95476 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
CTDNEP1O95476 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
CTDNEP1O95476 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC23.82■■□□□ 1.4
CTDNEP1O95476 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
CTDNEP1O95476 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
CTDNEP1O95476 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
CTDNEP1O95476 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CTDNEP1O95476 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CTDNEP1O95476 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CTDNEP1O95476 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CTDNEP1O95476 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CTDNEP1O95476 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC23.81■■□□□ 1.4
CTDNEP1O95476 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
CTDNEP1O95476 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CTDNEP1O95476 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
CTDNEP1O95476 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC23.81■■□□□ 1.4
CTDNEP1O95476 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CTDNEP1O95476 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC23.81■■□□□ 1.4
CTDNEP1O95476 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CTDNEP1O95476 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CTDNEP1O95476 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CTDNEP1O95476 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms