Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.1■□□□□ 0.65
HMGN4O00479 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGN4O00479 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGN4O00479 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGN4O00479 AC091799.1-201ENST00000422823 811 ntBASIC19.1■□□□□ 0.65
HMGN4O00479 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.1■□□□□ 0.65
HMGN4O00479 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.1■□□□□ 0.65
HMGN4O00479 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.1■□□□□ 0.65
HMGN4O00479 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGN4O00479 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
HMGN4O00479 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HMGN4O00479 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGN4O00479 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGN4O00479 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGN4O00479 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
HMGN4O00479 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGN4O00479 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.09■□□□□ 0.65
HMGN4O00479 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGN4O00479 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
HMGN4O00479 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGN4O00479 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGN4O00479 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGN4O00479 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.09■□□□□ 0.65
HMGN4O00479 AC019069.1-201ENST00000610008 1333 ntBASIC19.09■□□□□ 0.65
HMGN4O00479 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGN4O00479 AC092720.2-201ENST00000602388 1665 ntBASIC19.09■□□□□ 0.65
HMGN4O00479 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
HMGN4O00479 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGN4O00479 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGN4O00479 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGN4O00479 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.09■□□□□ 0.65
HMGN4O00479 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC19.09■□□□□ 0.65
HMGN4O00479 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.09■□□□□ 0.65
HMGN4O00479 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGN4O00479 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.09■□□□□ 0.65
HMGN4O00479 MIR2861-201ENST00000636310 90 ntBASIC19.09■□□□□ 0.65
HMGN4O00479 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGN4O00479 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HMGN4O00479 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.09■□□□□ 0.65
HMGN4O00479 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGN4O00479 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGN4O00479 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
HMGN4O00479 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGN4O00479 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.09■□□□□ 0.65
HMGN4O00479 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
HMGN4O00479 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
HMGN4O00479 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.08■□□□□ 0.65
HMGN4O00479 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
HMGN4O00479 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
HMGN4O00479 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
HMGN4O00479 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.08■□□□□ 0.64
HMGN4O00479 KRT19P1-201ENST00000405746 1186 ntBASIC19.08■□□□□ 0.64
HMGN4O00479 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC19.08■□□□□ 0.64
HMGN4O00479 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.08■□□□□ 0.64
HMGN4O00479 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
HMGN4O00479 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC19.08■□□□□ 0.64
HMGN4O00479 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
HMGN4O00479 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
HMGN4O00479 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.08■□□□□ 0.64
HMGN4O00479 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.08■□□□□ 0.64
HMGN4O00479 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
HMGN4O00479 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
HMGN4O00479 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
HMGN4O00479 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
HMGN4O00479 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
HMGN4O00479 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGN4O00479 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGN4O00479 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.07■□□□□ 0.64
HMGN4O00479 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGN4O00479 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HMGN4O00479 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HMGN4O00479 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC19.07■□□□□ 0.64
HMGN4O00479 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC19.07■□□□□ 0.64
HMGN4O00479 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.07■□□□□ 0.64
HMGN4O00479 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.07■□□□□ 0.64
HMGN4O00479 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGN4O00479 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGN4O00479 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGN4O00479 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HMGN4O00479 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HMGN4O00479 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGN4O00479 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGN4O00479 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGN4O00479 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
HMGN4O00479 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGN4O00479 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
HMGN4O00479 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
HMGN4O00479 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HMGN4O00479 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.06■□□□□ 0.64
HMGN4O00479 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
HMGN4O00479 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.06■□□□□ 0.64
HMGN4O00479 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.06■□□□□ 0.64
HMGN4O00479 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
HMGN4O00479 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HMGN4O00479 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.06■□□□□ 0.64
HMGN4O00479 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.06■□□□□ 0.64
HMGN4O00479 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.06■□□□□ 0.64
HMGN4O00479 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HMGN4O00479 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
HMGN4O00479 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms