Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC19.87■□□□□ 0.77
CUEDC1Q9NWM3 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CUEDC1Q9NWM3 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
CUEDC1Q9NWM3 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CUEDC1Q9NWM3 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.87■□□□□ 0.77
CUEDC1Q9NWM3 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.87■□□□□ 0.77
CUEDC1Q9NWM3 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
CUEDC1Q9NWM3 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.87■□□□□ 0.77
CUEDC1Q9NWM3 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CUEDC1Q9NWM3 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CUEDC1Q9NWM3 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CUEDC1Q9NWM3 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CUEDC1Q9NWM3 AC011484.1-201ENST00000377652 1995 ntBASIC19.86■□□□□ 0.77
CUEDC1Q9NWM3 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.86■□□□□ 0.77
CUEDC1Q9NWM3 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
CUEDC1Q9NWM3 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CUEDC1Q9NWM3 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CUEDC1Q9NWM3 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CUEDC1Q9NWM3 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
CUEDC1Q9NWM3 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC19.86■□□□□ 0.77
CUEDC1Q9NWM3 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CUEDC1Q9NWM3 GPX1P1-201ENST00000388829 606 ntBASIC19.86■□□□□ 0.77
CUEDC1Q9NWM3 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.86■□□□□ 0.77
CUEDC1Q9NWM3 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CUEDC1Q9NWM3 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
CUEDC1Q9NWM3 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CUEDC1Q9NWM3 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CUEDC1Q9NWM3 AL591742.1-201ENST00000604433 565 ntBASIC19.86■□□□□ 0.77
CUEDC1Q9NWM3 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
CUEDC1Q9NWM3 PARP1-210ENST00000629232 477 ntTSL 5 BASIC19.86■□□□□ 0.77
CUEDC1Q9NWM3 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
CUEDC1Q9NWM3 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.86■□□□□ 0.77
CUEDC1Q9NWM3 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CUEDC1Q9NWM3 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.85■□□□□ 0.77
CUEDC1Q9NWM3 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CUEDC1Q9NWM3 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.85■□□□□ 0.77
CUEDC1Q9NWM3 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CUEDC1Q9NWM3 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CUEDC1Q9NWM3 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CUEDC1Q9NWM3 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
CUEDC1Q9NWM3 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CUEDC1Q9NWM3 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
CUEDC1Q9NWM3 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CUEDC1Q9NWM3 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CUEDC1Q9NWM3 AC007322.3-201ENST00000426526 701 ntBASIC19.85■□□□□ 0.77
CUEDC1Q9NWM3 CYP2T1P-201ENST00000432607 1285 ntBASIC19.85■□□□□ 0.77
CUEDC1Q9NWM3 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.85■□□□□ 0.77
CUEDC1Q9NWM3 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC19.85■□□□□ 0.77
CUEDC1Q9NWM3 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CUEDC1Q9NWM3 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CUEDC1Q9NWM3 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CUEDC1Q9NWM3 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
CUEDC1Q9NWM3 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.85■□□□□ 0.77
CUEDC1Q9NWM3 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CUEDC1Q9NWM3 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CUEDC1Q9NWM3 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CUEDC1Q9NWM3 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CUEDC1Q9NWM3 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
CUEDC1Q9NWM3 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
CUEDC1Q9NWM3 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.84■□□□□ 0.77
CUEDC1Q9NWM3 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.84■□□□□ 0.77
CUEDC1Q9NWM3 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
CUEDC1Q9NWM3 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.84■□□□□ 0.77
CUEDC1Q9NWM3 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CUEDC1Q9NWM3 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CUEDC1Q9NWM3 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CUEDC1Q9NWM3 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
CUEDC1Q9NWM3 MIR663A-201ENST00000385250 93 ntBASIC19.84■□□□□ 0.77
CUEDC1Q9NWM3 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CUEDC1Q9NWM3 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.84■□□□□ 0.77
CUEDC1Q9NWM3 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CUEDC1Q9NWM3 AC005181.1-201ENST00000604782 1256 ntBASIC19.84■□□□□ 0.77
CUEDC1Q9NWM3 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.84■□□□□ 0.77
CUEDC1Q9NWM3 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.84■□□□□ 0.77
CUEDC1Q9NWM3 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CUEDC1Q9NWM3 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CUEDC1Q9NWM3 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
CUEDC1Q9NWM3 SLC25A24-204ENST00000569674 2357 ntBASIC19.84■□□□□ 0.77
CUEDC1Q9NWM3 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.83■□□□□ 0.77
CUEDC1Q9NWM3 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CUEDC1Q9NWM3 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
CUEDC1Q9NWM3 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CUEDC1Q9NWM3 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
CUEDC1Q9NWM3 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
CUEDC1Q9NWM3 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
CUEDC1Q9NWM3 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CUEDC1Q9NWM3 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CUEDC1Q9NWM3 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
CUEDC1Q9NWM3 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
CUEDC1Q9NWM3 TSPY20P-201ENST00000450910 630 ntBASIC19.83■□□□□ 0.77
CUEDC1Q9NWM3 CDV3P1-201ENST00000471403 739 ntBASIC19.83■□□□□ 0.77
CUEDC1Q9NWM3 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC19.83■□□□□ 0.77
CUEDC1Q9NWM3 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.83■□□□□ 0.77
CUEDC1Q9NWM3 AL050303.2-201ENST00000619798 666 ntBASIC19.83■□□□□ 0.77
CUEDC1Q9NWM3 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.83■□□□□ 0.76
CUEDC1Q9NWM3 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
CUEDC1Q9NWM3 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CUEDC1Q9NWM3 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.83■□□□□ 0.76
CUEDC1Q9NWM3 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
CUEDC1Q9NWM3 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms