Protein–RNA interactions for Protein: Q9NPG4

PCDH12, Protocadherin-12, humanhuman

Predictions only

Length 1,184 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH12Q9NPG4 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PCDH12Q9NPG4 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
PCDH12Q9NPG4 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PCDH12Q9NPG4 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
PCDH12Q9NPG4 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
PCDH12Q9NPG4 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
PCDH12Q9NPG4 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.71■□□□□ 0.91
PCDH12Q9NPG4 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.71■□□□□ 0.91
PCDH12Q9NPG4 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDH12Q9NPG4 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PCDH12Q9NPG4 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
PCDH12Q9NPG4 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.71■□□□□ 0.91
PCDH12Q9NPG4 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.71■□□□□ 0.91
PCDH12Q9NPG4 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PCDH12Q9NPG4 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PCDH12Q9NPG4 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
PCDH12Q9NPG4 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PCDH12Q9NPG4 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
PCDH12Q9NPG4 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.71■□□□□ 0.91
PCDH12Q9NPG4 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PCDH12Q9NPG4 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
PCDH12Q9NPG4 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
PCDH12Q9NPG4 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.91
PCDH12Q9NPG4 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.7■□□□□ 0.9
PCDH12Q9NPG4 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCDH12Q9NPG4 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
PCDH12Q9NPG4 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
PCDH12Q9NPG4 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCDH12Q9NPG4 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PCDH12Q9NPG4 BX276092.2-201ENST00000417668 665 ntBASIC20.7■□□□□ 0.9
PCDH12Q9NPG4 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.7■□□□□ 0.9
PCDH12Q9NPG4 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.7■□□□□ 0.9
PCDH12Q9NPG4 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.7■□□□□ 0.9
PCDH12Q9NPG4 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.7■□□□□ 0.9
PCDH12Q9NPG4 AC098934.4-201ENST00000564127 592 ntBASIC20.7■□□□□ 0.9
PCDH12Q9NPG4 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
PCDH12Q9NPG4 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
PCDH12Q9NPG4 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCDH12Q9NPG4 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCDH12Q9NPG4 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCDH12Q9NPG4 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH12Q9NPG4 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
PCDH12Q9NPG4 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH12Q9NPG4 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
PCDH12Q9NPG4 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20.69■□□□□ 0.9
PCDH12Q9NPG4 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.69■□□□□ 0.9
PCDH12Q9NPG4 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.69■□□□□ 0.9
PCDH12Q9NPG4 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.69■□□□□ 0.9
PCDH12Q9NPG4 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC20.69■□□□□ 0.9
PCDH12Q9NPG4 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.69■□□□□ 0.9
PCDH12Q9NPG4 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH12Q9NPG4 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH12Q9NPG4 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH12Q9NPG4 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.69■□□□□ 0.9
PCDH12Q9NPG4 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH12Q9NPG4 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH12Q9NPG4 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.69■□□□□ 0.9
PCDH12Q9NPG4 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
PCDH12Q9NPG4 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.68■□□□□ 0.9
PCDH12Q9NPG4 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH12Q9NPG4 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
PCDH12Q9NPG4 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH12Q9NPG4 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH12Q9NPG4 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.68■□□□□ 0.9
PCDH12Q9NPG4 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH12Q9NPG4 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH12Q9NPG4 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH12Q9NPG4 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.68■□□□□ 0.9
PCDH12Q9NPG4 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.68■□□□□ 0.9
PCDH12Q9NPG4 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
PCDH12Q9NPG4 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.68■□□□□ 0.9
PCDH12Q9NPG4 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH12Q9NPG4 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH12Q9NPG4 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH12Q9NPG4 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH12Q9NPG4 FEM1AP4-201ENST00000443167 1987 ntBASIC20.68■□□□□ 0.9
PCDH12Q9NPG4 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH12Q9NPG4 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH12Q9NPG4 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH12Q9NPG4 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDH12Q9NPG4 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PCDH12Q9NPG4 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
PCDH12Q9NPG4 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.67■□□□□ 0.9
PCDH12Q9NPG4 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDH12Q9NPG4 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.67■□□□□ 0.9
PCDH12Q9NPG4 AL355472.2-201ENST00000422958 438 ntBASIC20.67■□□□□ 0.9
PCDH12Q9NPG4 AC069152.1-201ENST00000438030 544 ntBASIC20.67■□□□□ 0.9
PCDH12Q9NPG4 APTR-205ENST00000447009 902 ntTSL 2 BASIC20.67■□□□□ 0.9
PCDH12Q9NPG4 MIR4758-201ENST00000577688 71 ntBASIC20.67■□□□□ 0.9
PCDH12Q9NPG4 AC100791.3-201ENST00000617619 330 ntBASIC20.67■□□□□ 0.9
PCDH12Q9NPG4 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.67■□□□□ 0.9
PCDH12Q9NPG4 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PCDH12Q9NPG4 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDH12Q9NPG4 AL137060.1-201ENST00000618151 2648 ntBASIC20.67■□□□□ 0.9
PCDH12Q9NPG4 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDH12Q9NPG4 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PCDH12Q9NPG4 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDH12Q9NPG4 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
PCDH12Q9NPG4 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.66■□□□□ 0.9
PCDH12Q9NPG4 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms