Protein–RNA interactions for Protein: Q9H9S3

SEC61A2, Protein transport protein Sec61 subunit alpha isoform 2, humanhuman

Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A2Q9H9S3 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
SEC61A2Q9H9S3 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
SEC61A2Q9H9S3 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SEC61A2Q9H9S3 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.39■□□□□ 0.53
SEC61A2Q9H9S3 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SEC61A2Q9H9S3 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SEC61A2Q9H9S3 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
SEC61A2Q9H9S3 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
SEC61A2Q9H9S3 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC18.39■□□□□ 0.53
SEC61A2Q9H9S3 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC18.39■□□□□ 0.53
SEC61A2Q9H9S3 AP001160.3-201ENST00000601484 763 ntBASIC18.39■□□□□ 0.53
SEC61A2Q9H9S3 AC121338.2-201ENST00000622535 1744 ntBASIC18.39■□□□□ 0.53
SEC61A2Q9H9S3 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC18.39■□□□□ 0.53
SEC61A2Q9H9S3 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SEC61A2Q9H9S3 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SEC61A2Q9H9S3 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SEC61A2Q9H9S3 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
SEC61A2Q9H9S3 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SEC61A2Q9H9S3 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SEC61A2Q9H9S3 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SEC61A2Q9H9S3 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
SEC61A2Q9H9S3 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC18.38■□□□□ 0.53
SEC61A2Q9H9S3 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SEC61A2Q9H9S3 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SEC61A2Q9H9S3 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
SEC61A2Q9H9S3 NAA20-201ENST00000310450 920 ntTSL 2 BASIC18.38■□□□□ 0.53
SEC61A2Q9H9S3 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SEC61A2Q9H9S3 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
SEC61A2Q9H9S3 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC18.38■□□□□ 0.53
SEC61A2Q9H9S3 AC010141.2-201ENST00000452426 721 ntBASIC18.38■□□□□ 0.53
SEC61A2Q9H9S3 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC18.38■□□□□ 0.53
SEC61A2Q9H9S3 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC18.38■□□□□ 0.53
SEC61A2Q9H9S3 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SEC61A2Q9H9S3 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC18.38■□□□□ 0.53
SEC61A2Q9H9S3 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SEC61A2Q9H9S3 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
SEC61A2Q9H9S3 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
SEC61A2Q9H9S3 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.38■□□□□ 0.53
SEC61A2Q9H9S3 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC18.38■□□□□ 0.53
SEC61A2Q9H9S3 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SEC61A2Q9H9S3 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SEC61A2Q9H9S3 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SEC61A2Q9H9S3 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
SEC61A2Q9H9S3 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
SEC61A2Q9H9S3 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
SEC61A2Q9H9S3 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC18.37■□□□□ 0.53
SEC61A2Q9H9S3 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC18.37■□□□□ 0.53
SEC61A2Q9H9S3 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.37■□□□□ 0.53
SEC61A2Q9H9S3 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
SEC61A2Q9H9S3 HSCB-202ENST00000398941 955 ntTSL 2 BASIC18.37■□□□□ 0.53
SEC61A2Q9H9S3 AC016769.1-201ENST00000409132 1010 ntBASIC18.37■□□□□ 0.53
SEC61A2Q9H9S3 AC006015.1-201ENST00000429970 570 ntBASIC18.37■□□□□ 0.53
SEC61A2Q9H9S3 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SEC61A2Q9H9S3 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SEC61A2Q9H9S3 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SEC61A2Q9H9S3 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SEC61A2Q9H9S3 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
SEC61A2Q9H9S3 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SEC61A2Q9H9S3 PLK5-205ENST00000642079 1969 ntBASIC18.37■□□□□ 0.53
SEC61A2Q9H9S3 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
SEC61A2Q9H9S3 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SEC61A2Q9H9S3 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SEC61A2Q9H9S3 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
SEC61A2Q9H9S3 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SEC61A2Q9H9S3 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
SEC61A2Q9H9S3 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SEC61A2Q9H9S3 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
SEC61A2Q9H9S3 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
SEC61A2Q9H9S3 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SEC61A2Q9H9S3 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SEC61A2Q9H9S3 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC18.36■□□□□ 0.53
SEC61A2Q9H9S3 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC18.36■□□□□ 0.53
SEC61A2Q9H9S3 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SEC61A2Q9H9S3 UBE2DNL-204ENST00000602536 740 ntBASIC18.36■□□□□ 0.53
SEC61A2Q9H9S3 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC18.36■□□□□ 0.53
SEC61A2Q9H9S3 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SEC61A2Q9H9S3 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC18.36■□□□□ 0.53
SEC61A2Q9H9S3 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
SEC61A2Q9H9S3 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.35■□□□□ 0.53
SEC61A2Q9H9S3 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.35■□□□□ 0.53
SEC61A2Q9H9S3 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC18.35■□□□□ 0.53
SEC61A2Q9H9S3 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
SEC61A2Q9H9S3 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC18.35■□□□□ 0.53
SEC61A2Q9H9S3 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SEC61A2Q9H9S3 AC006128.1-201ENST00000624704 1661 ntBASIC18.35■□□□□ 0.53
SEC61A2Q9H9S3 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SEC61A2Q9H9S3 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
SEC61A2Q9H9S3 KRT16P2-201ENST00000414673 1423 ntBASIC18.35■□□□□ 0.53
SEC61A2Q9H9S3 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SEC61A2Q9H9S3 SLC7A5P2-201ENST00000553010 536 ntBASIC18.35■□□□□ 0.53
SEC61A2Q9H9S3 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC18.35■□□□□ 0.53
SEC61A2Q9H9S3 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.35■□□□□ 0.53
SEC61A2Q9H9S3 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
SEC61A2Q9H9S3 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC18.35■□□□□ 0.53
SEC61A2Q9H9S3 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SEC61A2Q9H9S3 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SEC61A2Q9H9S3 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
SEC61A2Q9H9S3 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SEC61A2Q9H9S3 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SEC61A2Q9H9S3 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms