Protein–RNA interactions for Protein: Q9BT78

COPS4, COP9 signalosome complex subunit 4, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPS4Q9BT78 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.82■□□□□ 0.6
COPS4Q9BT78 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC18.82■□□□□ 0.6
COPS4Q9BT78 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC18.82■□□□□ 0.6
COPS4Q9BT78 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COPS4Q9BT78 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
COPS4Q9BT78 AC099778.1-201ENST00000568593 1911 ntBASIC18.82■□□□□ 0.6
COPS4Q9BT78 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
COPS4Q9BT78 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COPS4Q9BT78 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
COPS4Q9BT78 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
COPS4Q9BT78 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
COPS4Q9BT78 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COPS4Q9BT78 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COPS4Q9BT78 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COPS4Q9BT78 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
COPS4Q9BT78 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COPS4Q9BT78 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
COPS4Q9BT78 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COPS4Q9BT78 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC18.81■□□□□ 0.6
COPS4Q9BT78 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC18.81■□□□□ 0.6
COPS4Q9BT78 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
COPS4Q9BT78 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COPS4Q9BT78 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.81■□□□□ 0.6
COPS4Q9BT78 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COPS4Q9BT78 STX5-203ENST00000394690 1568 ntTSL 5 BASIC18.81■□□□□ 0.6
COPS4Q9BT78 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
COPS4Q9BT78 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.8■□□□□ 0.6
COPS4Q9BT78 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
COPS4Q9BT78 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
COPS4Q9BT78 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COPS4Q9BT78 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
COPS4Q9BT78 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.8■□□□□ 0.6
COPS4Q9BT78 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
COPS4Q9BT78 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COPS4Q9BT78 UNC93B3-201ENST00000308076 687 ntBASIC18.8■□□□□ 0.6
COPS4Q9BT78 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
COPS4Q9BT78 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
COPS4Q9BT78 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
COPS4Q9BT78 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COPS4Q9BT78 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
COPS4Q9BT78 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COPS4Q9BT78 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COPS4Q9BT78 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COPS4Q9BT78 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
COPS4Q9BT78 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COPS4Q9BT78 SNX3-202ENST00000349379 890 ntTSL 2 BASIC18.79■□□□□ 0.6
COPS4Q9BT78 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COPS4Q9BT78 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC18.79■□□□□ 0.6
COPS4Q9BT78 MIR4767-201ENST00000582827 78 ntBASIC18.79■□□□□ 0.6
COPS4Q9BT78 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC18.79■□□□□ 0.6
COPS4Q9BT78 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC18.79■□□□□ 0.6
COPS4Q9BT78 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
COPS4Q9BT78 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC18.79■□□□□ 0.6
COPS4Q9BT78 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COPS4Q9BT78 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
COPS4Q9BT78 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
COPS4Q9BT78 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COPS4Q9BT78 AC018445.3-201ENST00000624177 1945 ntBASIC18.78■□□□□ 0.6
COPS4Q9BT78 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC18.78■□□□□ 0.6
COPS4Q9BT78 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COPS4Q9BT78 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.78■□□□□ 0.6
COPS4Q9BT78 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COPS4Q9BT78 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COPS4Q9BT78 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COPS4Q9BT78 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.78■□□□□ 0.6
COPS4Q9BT78 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.78■□□□□ 0.6
COPS4Q9BT78 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC18.78■□□□□ 0.6
COPS4Q9BT78 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COPS4Q9BT78 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC18.78■□□□□ 0.6
COPS4Q9BT78 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.78■□□□□ 0.6
COPS4Q9BT78 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC18.78■□□□□ 0.6
COPS4Q9BT78 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC18.78■□□□□ 0.6
COPS4Q9BT78 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC18.78■□□□□ 0.6
COPS4Q9BT78 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COPS4Q9BT78 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.78■□□□□ 0.6
COPS4Q9BT78 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
COPS4Q9BT78 AC008406.3-201ENST00000620001 1374 ntBASIC18.78■□□□□ 0.6
COPS4Q9BT78 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
COPS4Q9BT78 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COPS4Q9BT78 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.78■□□□□ 0.6
COPS4Q9BT78 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COPS4Q9BT78 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
COPS4Q9BT78 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC18.77■□□□□ 0.6
COPS4Q9BT78 FP700111.2-201ENST00000619190 1892 ntBASIC18.77■□□□□ 0.6
COPS4Q9BT78 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
COPS4Q9BT78 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
COPS4Q9BT78 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.77■□□□□ 0.6
COPS4Q9BT78 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
COPS4Q9BT78 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COPS4Q9BT78 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COPS4Q9BT78 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
COPS4Q9BT78 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
COPS4Q9BT78 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC18.77■□□□□ 0.6
COPS4Q9BT78 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COPS4Q9BT78 AL136162.1-201ENST00000607711 1078 ntBASIC18.77■□□□□ 0.6
COPS4Q9BT78 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
COPS4Q9BT78 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COPS4Q9BT78 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COPS4Q9BT78 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
COPS4Q9BT78 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms