Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
NKX3-1Q99801 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
NKX3-1Q99801 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
NKX3-1Q99801 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
NKX3-1Q99801 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
NKX3-1Q99801 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC17.89■□□□□ 0.45
NKX3-1Q99801 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
NKX3-1Q99801 GUK1-205ENST00000366722 850 ntTSL 3 BASIC17.89■□□□□ 0.45
NKX3-1Q99801 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC17.89■□□□□ 0.45
NKX3-1Q99801 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC17.89■□□□□ 0.45
NKX3-1Q99801 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
NKX3-1Q99801 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
NKX3-1Q99801 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
NKX3-1Q99801 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC17.89■□□□□ 0.45
NKX3-1Q99801 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC17.89■□□□□ 0.45
NKX3-1Q99801 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
NKX3-1Q99801 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
NKX3-1Q99801 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
NKX3-1Q99801 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
NKX3-1Q99801 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
NKX3-1Q99801 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
NKX3-1Q99801 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
NKX3-1Q99801 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
NKX3-1Q99801 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
NKX3-1Q99801 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC17.88■□□□□ 0.45
NKX3-1Q99801 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
NKX3-1Q99801 EBPL-204ENST00000378272 766 ntTSL 3 BASIC17.88■□□□□ 0.45
NKX3-1Q99801 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC17.88■□□□□ 0.45
NKX3-1Q99801 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC17.88■□□□□ 0.45
NKX3-1Q99801 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC17.88■□□□□ 0.45
NKX3-1Q99801 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
NKX3-1Q99801 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
NKX3-1Q99801 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC17.88■□□□□ 0.45
NKX3-1Q99801 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC17.88■□□□□ 0.45
NKX3-1Q99801 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
NKX3-1Q99801 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
NKX3-1Q99801 AC009237.3-201ENST00000393279 1427 ntBASIC17.88■□□□□ 0.45
NKX3-1Q99801 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
NKX3-1Q99801 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
NKX3-1Q99801 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
NKX3-1Q99801 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
NKX3-1Q99801 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
NKX3-1Q99801 BX005040.4-201ENST00000637145 1518 ntBASIC17.88■□□□□ 0.45
NKX3-1Q99801 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC17.87■□□□□ 0.45
NKX3-1Q99801 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
NKX3-1Q99801 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
NKX3-1Q99801 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
NKX3-1Q99801 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC17.87■□□□□ 0.45
NKX3-1Q99801 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC17.87■□□□□ 0.45
NKX3-1Q99801 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC17.87■□□□□ 0.45
NKX3-1Q99801 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
NKX3-1Q99801 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
NKX3-1Q99801 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
NKX3-1Q99801 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC17.87■□□□□ 0.45
NKX3-1Q99801 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC17.87■□□□□ 0.45
NKX3-1Q99801 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
NKX3-1Q99801 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC17.87■□□□□ 0.45
NKX3-1Q99801 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
NKX3-1Q99801 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC17.87■□□□□ 0.45
NKX3-1Q99801 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
NKX3-1Q99801 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC17.87■□□□□ 0.45
NKX3-1Q99801 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
NKX3-1Q99801 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NKX3-1Q99801 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC17.86■□□□□ 0.45
NKX3-1Q99801 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
NKX3-1Q99801 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NKX3-1Q99801 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NKX3-1Q99801 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NKX3-1Q99801 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NKX3-1Q99801 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NKX3-1Q99801 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
NKX3-1Q99801 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
NKX3-1Q99801 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
NKX3-1Q99801 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
NKX3-1Q99801 AL031432.3-201ENST00000607698 485 ntBASIC17.86■□□□□ 0.45
NKX3-1Q99801 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC17.86■□□□□ 0.45
NKX3-1Q99801 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
NKX3-1Q99801 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NKX3-1Q99801 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
NKX3-1Q99801 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NKX3-1Q99801 AC061975.6-201ENST00000579045 1553 ntBASIC17.86■□□□□ 0.45
NKX3-1Q99801 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NKX3-1Q99801 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NKX3-1Q99801 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NKX3-1Q99801 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC17.86■□□□□ 0.45
NKX3-1Q99801 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
NKX3-1Q99801 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
NKX3-1Q99801 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
NKX3-1Q99801 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC17.86■□□□□ 0.45
NKX3-1Q99801 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
NKX3-1Q99801 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NKX3-1Q99801 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
NKX3-1Q99801 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
NKX3-1Q99801 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC17.85■□□□□ 0.45
NKX3-1Q99801 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
NKX3-1Q99801 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
NKX3-1Q99801 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC17.85■□□□□ 0.45
NKX3-1Q99801 LHPP-203ENST00000392757 840 ntTSL 3 BASIC17.85■□□□□ 0.45
NKX3-1Q99801 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC17.85■□□□□ 0.45
NKX3-1Q99801 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms