Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC24.61■■□□□ 1.53
SMC1BQ8NDV3 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC24.61■■□□□ 1.53
SMC1BQ8NDV3 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC24.61■■□□□ 1.53
SMC1BQ8NDV3 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC24.61■■□□□ 1.53
SMC1BQ8NDV3 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC24.61■■□□□ 1.53
SMC1BQ8NDV3 AC073195.1-201ENST00000607241 877 ntBASIC24.61■■□□□ 1.53
SMC1BQ8NDV3 AC010947.1-201ENST00000623454 693 ntBASIC24.61■■□□□ 1.53
SMC1BQ8NDV3 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC24.61■■□□□ 1.53
SMC1BQ8NDV3 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC24.61■■□□□ 1.53
SMC1BQ8NDV3 EED-207ENST00000528180 1745 ntTSL 5 BASIC24.61■■□□□ 1.53
SMC1BQ8NDV3 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
SMC1BQ8NDV3 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC24.6■■□□□ 1.53
SMC1BQ8NDV3 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
SMC1BQ8NDV3 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
SMC1BQ8NDV3 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
SMC1BQ8NDV3 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC24.6■■□□□ 1.53
SMC1BQ8NDV3 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
SMC1BQ8NDV3 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
SMC1BQ8NDV3 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
SMC1BQ8NDV3 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
SMC1BQ8NDV3 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC24.6■■□□□ 1.53
SMC1BQ8NDV3 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC24.6■■□□□ 1.53
SMC1BQ8NDV3 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
SMC1BQ8NDV3 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
SMC1BQ8NDV3 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC24.59■■□□□ 1.53
SMC1BQ8NDV3 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC24.59■■□□□ 1.53
SMC1BQ8NDV3 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC24.59■■□□□ 1.53
SMC1BQ8NDV3 KRT16P5-201ENST00000455284 522 ntBASIC24.59■■□□□ 1.53
SMC1BQ8NDV3 AC006011.2-201ENST00000621313 1158 ntBASIC24.59■■□□□ 1.53
SMC1BQ8NDV3 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC24.59■■□□□ 1.53
SMC1BQ8NDV3 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC24.59■■□□□ 1.53
SMC1BQ8NDV3 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC24.59■■□□□ 1.53
SMC1BQ8NDV3 VPS72-207ENST00000640458 689 ntTSL 5 BASIC24.59■■□□□ 1.53
SMC1BQ8NDV3 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC24.59■■□□□ 1.53
SMC1BQ8NDV3 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC24.59■■□□□ 1.53
SMC1BQ8NDV3 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
SMC1BQ8NDV3 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
SMC1BQ8NDV3 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
SMC1BQ8NDV3 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
SMC1BQ8NDV3 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC24.58■■□□□ 1.53
SMC1BQ8NDV3 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.53
SMC1BQ8NDV3 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC24.58■■□□□ 1.53
SMC1BQ8NDV3 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC24.58■■□□□ 1.53
SMC1BQ8NDV3 SERP1-205ENST00000487153 657 ntTSL 4 BASIC24.58■■□□□ 1.53
SMC1BQ8NDV3 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC24.58■■□□□ 1.53
SMC1BQ8NDV3 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
SMC1BQ8NDV3 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
SMC1BQ8NDV3 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC24.58■■□□□ 1.53
SMC1BQ8NDV3 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC24.58■■□□□ 1.53
SMC1BQ8NDV3 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC24.58■■□□□ 1.53
SMC1BQ8NDV3 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.52
SMC1BQ8NDV3 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
SMC1BQ8NDV3 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC24.58■■□□□ 1.52
SMC1BQ8NDV3 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC24.57■■□□□ 1.52
SMC1BQ8NDV3 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC24.57■■□□□ 1.52
SMC1BQ8NDV3 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
SMC1BQ8NDV3 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
SMC1BQ8NDV3 AL390719.1-204ENST00000412397 1219 ntBASIC24.57■■□□□ 1.52
SMC1BQ8NDV3 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC24.57■■□□□ 1.52
SMC1BQ8NDV3 THRA-202ENST00000394121 2260 ntTSL 2 BASIC24.57■■□□□ 1.52
SMC1BQ8NDV3 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
SMC1BQ8NDV3 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC24.57■■□□□ 1.52
SMC1BQ8NDV3 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC24.57■■□□□ 1.52
SMC1BQ8NDV3 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
SMC1BQ8NDV3 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC24.56■■□□□ 1.52
SMC1BQ8NDV3 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC24.56■■□□□ 1.52
SMC1BQ8NDV3 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
SMC1BQ8NDV3 RER1-204ENST00000378518 522 ntTSL 3 BASIC24.56■■□□□ 1.52
SMC1BQ8NDV3 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC24.56■■□□□ 1.52
SMC1BQ8NDV3 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC24.56■■□□□ 1.52
SMC1BQ8NDV3 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC24.56■■□□□ 1.52
SMC1BQ8NDV3 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
SMC1BQ8NDV3 FITM1-202ENST00000559294 800 ntBASIC24.56■■□□□ 1.52
SMC1BQ8NDV3 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC24.56■■□□□ 1.52
SMC1BQ8NDV3 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC24.56■■□□□ 1.52
SMC1BQ8NDV3 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC24.56■■□□□ 1.52
SMC1BQ8NDV3 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
SMC1BQ8NDV3 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC24.56■■□□□ 1.52
SMC1BQ8NDV3 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
SMC1BQ8NDV3 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
SMC1BQ8NDV3 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC24.55■■□□□ 1.52
SMC1BQ8NDV3 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
SMC1BQ8NDV3 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC24.55■■□□□ 1.52
SMC1BQ8NDV3 GUK1-204ENST00000366721 689 ntTSL 3 BASIC24.55■■□□□ 1.52
SMC1BQ8NDV3 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
SMC1BQ8NDV3 CRYGFP-201ENST00000418459 633 ntBASIC24.55■■□□□ 1.52
SMC1BQ8NDV3 AL390955.1-201ENST00000428694 934 ntBASIC24.55■■□□□ 1.52
SMC1BQ8NDV3 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC24.55■■□□□ 1.52
SMC1BQ8NDV3 LIN28AP1-201ENST00000429574 405 ntBASIC24.55■■□□□ 1.52
SMC1BQ8NDV3 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC24.55■■□□□ 1.52
SMC1BQ8NDV3 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC24.55■■□□□ 1.52
SMC1BQ8NDV3 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC24.55■■□□□ 1.52
SMC1BQ8NDV3 AC010203.1-204ENST00000548782 407 ntBASIC24.55■■□□□ 1.52
SMC1BQ8NDV3 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC24.55■■□□□ 1.52
SMC1BQ8NDV3 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC24.55■■□□□ 1.52
SMC1BQ8NDV3 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC24.55■■□□□ 1.52
SMC1BQ8NDV3 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC24.55■■□□□ 1.52
SMC1BQ8NDV3 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC24.55■■□□□ 1.52
SMC1BQ8NDV3 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
SMC1BQ8NDV3 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms