Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
HDDC3Q8N4P3 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
HDDC3Q8N4P3 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
HDDC3Q8N4P3 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
HDDC3Q8N4P3 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.68■□□□□ 0.9
HDDC3Q8N4P3 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HDDC3Q8N4P3 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.68■□□□□ 0.9
HDDC3Q8N4P3 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
HDDC3Q8N4P3 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC20.68■□□□□ 0.9
HDDC3Q8N4P3 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
HDDC3Q8N4P3 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20.68■□□□□ 0.9
HDDC3Q8N4P3 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HDDC3Q8N4P3 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
HDDC3Q8N4P3 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC20.68■□□□□ 0.9
HDDC3Q8N4P3 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
HDDC3Q8N4P3 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HDDC3Q8N4P3 AL117328.2-201ENST00000624617 1940 ntBASIC20.68■□□□□ 0.9
HDDC3Q8N4P3 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
HDDC3Q8N4P3 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HDDC3Q8N4P3 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.68■□□□□ 0.9
HDDC3Q8N4P3 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HDDC3Q8N4P3 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HDDC3Q8N4P3 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HDDC3Q8N4P3 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HDDC3Q8N4P3 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HDDC3Q8N4P3 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HDDC3Q8N4P3 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC20.67■□□□□ 0.9
HDDC3Q8N4P3 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HDDC3Q8N4P3 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.67■□□□□ 0.9
HDDC3Q8N4P3 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HDDC3Q8N4P3 MME-217ENST00000616757 1315 ntTSL 5 BASIC20.67■□□□□ 0.9
HDDC3Q8N4P3 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HDDC3Q8N4P3 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
HDDC3Q8N4P3 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.67■□□□□ 0.9
HDDC3Q8N4P3 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HDDC3Q8N4P3 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.67■□□□□ 0.9
HDDC3Q8N4P3 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HDDC3Q8N4P3 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
HDDC3Q8N4P3 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
HDDC3Q8N4P3 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HDDC3Q8N4P3 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.66■□□□□ 0.9
HDDC3Q8N4P3 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
HDDC3Q8N4P3 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HDDC3Q8N4P3 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.66■□□□□ 0.9
HDDC3Q8N4P3 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.66■□□□□ 0.9
HDDC3Q8N4P3 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC20.66■□□□□ 0.9
HDDC3Q8N4P3 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
HDDC3Q8N4P3 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
HDDC3Q8N4P3 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
HDDC3Q8N4P3 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
HDDC3Q8N4P3 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HDDC3Q8N4P3 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
HDDC3Q8N4P3 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.66■□□□□ 0.9
HDDC3Q8N4P3 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.66■□□□□ 0.9
HDDC3Q8N4P3 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.66■□□□□ 0.9
HDDC3Q8N4P3 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
HDDC3Q8N4P3 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.65■□□□□ 0.9
HDDC3Q8N4P3 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HDDC3Q8N4P3 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HDDC3Q8N4P3 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HDDC3Q8N4P3 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HDDC3Q8N4P3 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HDDC3Q8N4P3 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HDDC3Q8N4P3 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC20.65■□□□□ 0.9
HDDC3Q8N4P3 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.65■□□□□ 0.9
HDDC3Q8N4P3 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.65■□□□□ 0.9
HDDC3Q8N4P3 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.65■□□□□ 0.9
HDDC3Q8N4P3 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC20.65■□□□□ 0.9
HDDC3Q8N4P3 FAM197Y4-202ENST00000622692 608 ntBASIC20.65■□□□□ 0.9
HDDC3Q8N4P3 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HDDC3Q8N4P3 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.65■□□□□ 0.9
HDDC3Q8N4P3 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.65■□□□□ 0.9
HDDC3Q8N4P3 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.65■□□□□ 0.9
HDDC3Q8N4P3 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HDDC3Q8N4P3 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.64■□□□□ 0.9
HDDC3Q8N4P3 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.64■□□□□ 0.9
HDDC3Q8N4P3 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
HDDC3Q8N4P3 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.64■□□□□ 0.9
HDDC3Q8N4P3 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HDDC3Q8N4P3 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HDDC3Q8N4P3 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
HDDC3Q8N4P3 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HDDC3Q8N4P3 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.64■□□□□ 0.89
HDDC3Q8N4P3 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HDDC3Q8N4P3 AC060766.5-201ENST00000590539 871 ntBASIC20.64■□□□□ 0.89
HDDC3Q8N4P3 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HDDC3Q8N4P3 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HDDC3Q8N4P3 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC20.64■□□□□ 0.89
HDDC3Q8N4P3 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HDDC3Q8N4P3 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
HDDC3Q8N4P3 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.63■□□□□ 0.89
HDDC3Q8N4P3 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
HDDC3Q8N4P3 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC20.63■□□□□ 0.89
HDDC3Q8N4P3 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
HDDC3Q8N4P3 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.63■□□□□ 0.89
HDDC3Q8N4P3 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HDDC3Q8N4P3 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HDDC3Q8N4P3 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC20.63■□□□□ 0.89
HDDC3Q8N4P3 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
HDDC3Q8N4P3 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms