Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC17.29■□□□□ 0.36
VPS13CQ709C8 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC17.29■□□□□ 0.36
VPS13CQ709C8 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS13CQ709C8 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC17.29■□□□□ 0.36
VPS13CQ709C8 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS13CQ709C8 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VPS13CQ709C8 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS13CQ709C8 PBX1-209ENST00000485769 834 ntTSL 2 BASIC17.29■□□□□ 0.36
VPS13CQ709C8 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
VPS13CQ709C8 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS13CQ709C8 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS13CQ709C8 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS13CQ709C8 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
VPS13CQ709C8 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS13CQ709C8 AC239809.2-201ENST00000415381 517 ntBASIC17.28■□□□□ 0.36
VPS13CQ709C8 VMO1-204ENST00000441199 741 ntTSL 2 BASIC17.28■□□□□ 0.36
VPS13CQ709C8 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC17.28■□□□□ 0.36
VPS13CQ709C8 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC17.28■□□□□ 0.36
VPS13CQ709C8 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC17.28■□□□□ 0.36
VPS13CQ709C8 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
VPS13CQ709C8 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC17.28■□□□□ 0.36
VPS13CQ709C8 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
VPS13CQ709C8 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS13CQ709C8 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS13CQ709C8 AL135905.2-201ENST00000584934 1404 ntBASIC17.28■□□□□ 0.36
VPS13CQ709C8 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS13CQ709C8 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC17.28■□□□□ 0.36
VPS13CQ709C8 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC17.28■□□□□ 0.36
VPS13CQ709C8 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17.28■□□□□ 0.36
VPS13CQ709C8 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
VPS13CQ709C8 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VPS13CQ709C8 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC17.27■□□□□ 0.36
VPS13CQ709C8 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC17.27■□□□□ 0.36
VPS13CQ709C8 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
VPS13CQ709C8 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VPS13CQ709C8 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VPS13CQ709C8 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
VPS13CQ709C8 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
VPS13CQ709C8 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC17.27■□□□□ 0.36
VPS13CQ709C8 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC17.27■□□□□ 0.36
VPS13CQ709C8 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC17.27■□□□□ 0.36
VPS13CQ709C8 AC133681.1-201ENST00000465482 601 ntBASIC17.27■□□□□ 0.36
VPS13CQ709C8 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC17.27■□□□□ 0.36
VPS13CQ709C8 AC005829.2-201ENST00000571422 1056 ntBASIC17.27■□□□□ 0.36
VPS13CQ709C8 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
VPS13CQ709C8 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VPS13CQ709C8 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VPS13CQ709C8 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.27■□□□□ 0.36
VPS13CQ709C8 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC17.27■□□□□ 0.36
VPS13CQ709C8 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VPS13CQ709C8 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
VPS13CQ709C8 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC17.27■□□□□ 0.36
VPS13CQ709C8 MFF-205ENST00000354503 1085 ntTSL 2 BASIC17.27■□□□□ 0.36
VPS13CQ709C8 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.27■□□□□ 0.36
VPS13CQ709C8 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VPS13CQ709C8 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VPS13CQ709C8 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VPS13CQ709C8 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
VPS13CQ709C8 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
VPS13CQ709C8 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC17.27■□□□□ 0.35
VPS13CQ709C8 NXN-202ENST00000537628 1340 ntTSL 3 BASIC17.27■□□□□ 0.35
VPS13CQ709C8 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VPS13CQ709C8 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
VPS13CQ709C8 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
VPS13CQ709C8 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VPS13CQ709C8 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
VPS13CQ709C8 AC091799.1-201ENST00000422823 811 ntBASIC17.27■□□□□ 0.35
VPS13CQ709C8 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC17.27■□□□□ 0.35
VPS13CQ709C8 RBM42-202ENST00000586618 771 ntTSL 3 BASIC17.27■□□□□ 0.35
VPS13CQ709C8 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC17.26■□□□□ 0.35
VPS13CQ709C8 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VPS13CQ709C8 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS13CQ709C8 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS13CQ709C8 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VPS13CQ709C8 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
VPS13CQ709C8 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC17.26■□□□□ 0.35
VPS13CQ709C8 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VPS13CQ709C8 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC17.26■□□□□ 0.35
VPS13CQ709C8 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS13CQ709C8 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VPS13CQ709C8 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS13CQ709C8 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VPS13CQ709C8 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VPS13CQ709C8 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VPS13CQ709C8 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC17.26■□□□□ 0.35
VPS13CQ709C8 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS13CQ709C8 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC17.26■□□□□ 0.35
VPS13CQ709C8 GGT1-206ENST00000404223 952 ntTSL 2 BASIC17.26■□□□□ 0.35
VPS13CQ709C8 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.26■□□□□ 0.35
VPS13CQ709C8 AP001412.1-201ENST00000608405 714 ntBASIC17.26■□□□□ 0.35
VPS13CQ709C8 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS13CQ709C8 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS13CQ709C8 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS13CQ709C8 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS13CQ709C8 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
VPS13CQ709C8 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC17.26■□□□□ 0.35
VPS13CQ709C8 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC17.26■□□□□ 0.35
VPS13CQ709C8 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VPS13CQ709C8 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC17.26■□□□□ 0.35
VPS13CQ709C8 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms