Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.64■□□□□ 0.74
PPP4R4Q6NUP7 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PPP4R4Q6NUP7 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
PPP4R4Q6NUP7 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
PPP4R4Q6NUP7 RHOF-204ENST00000537265 699 ntTSL 2 BASIC19.64■□□□□ 0.73
PPP4R4Q6NUP7 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC19.64■□□□□ 0.73
PPP4R4Q6NUP7 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
PPP4R4Q6NUP7 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC19.64■□□□□ 0.73
PPP4R4Q6NUP7 AL031602.1-201ENST00000633169 911 ntBASIC19.64■□□□□ 0.73
PPP4R4Q6NUP7 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PPP4R4Q6NUP7 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PPP4R4Q6NUP7 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PPP4R4Q6NUP7 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PPP4R4Q6NUP7 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PPP4R4Q6NUP7 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PPP4R4Q6NUP7 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.64■□□□□ 0.73
PPP4R4Q6NUP7 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PPP4R4Q6NUP7 AL020996.1-203ENST00000536896 2307 ntBASIC19.64■□□□□ 0.73
PPP4R4Q6NUP7 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PPP4R4Q6NUP7 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
PPP4R4Q6NUP7 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
PPP4R4Q6NUP7 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
PPP4R4Q6NUP7 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
PPP4R4Q6NUP7 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
PPP4R4Q6NUP7 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PPP4R4Q6NUP7 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PPP4R4Q6NUP7 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
PPP4R4Q6NUP7 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC19.63■□□□□ 0.73
PPP4R4Q6NUP7 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC19.63■□□□□ 0.73
PPP4R4Q6NUP7 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PPP4R4Q6NUP7 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC19.63■□□□□ 0.73
PPP4R4Q6NUP7 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
PPP4R4Q6NUP7 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PPP4R4Q6NUP7 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PPP4R4Q6NUP7 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PPP4R4Q6NUP7 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PPP4R4Q6NUP7 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
PPP4R4Q6NUP7 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
PPP4R4Q6NUP7 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
PPP4R4Q6NUP7 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
PPP4R4Q6NUP7 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PPP4R4Q6NUP7 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.62■□□□□ 0.73
PPP4R4Q6NUP7 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
PPP4R4Q6NUP7 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
PPP4R4Q6NUP7 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.62■□□□□ 0.73
PPP4R4Q6NUP7 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.62■□□□□ 0.73
PPP4R4Q6NUP7 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PPP4R4Q6NUP7 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
PPP4R4Q6NUP7 AC087289.5-201ENST00000586076 3175 ntBASIC19.62■□□□□ 0.73
PPP4R4Q6NUP7 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PPP4R4Q6NUP7 NME4-202ENST00000382940 766 ntTSL 3 BASIC19.62■□□□□ 0.73
PPP4R4Q6NUP7 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
PPP4R4Q6NUP7 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
PPP4R4Q6NUP7 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
PPP4R4Q6NUP7 NME4-211ENST00000620944 1193 ntTSL 2 BASIC19.62■□□□□ 0.73
PPP4R4Q6NUP7 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.62■□□□□ 0.73
PPP4R4Q6NUP7 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PPP4R4Q6NUP7 AC027702.1-201ENST00000563810 1770 ntBASIC19.62■□□□□ 0.73
PPP4R4Q6NUP7 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PPP4R4Q6NUP7 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PPP4R4Q6NUP7 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
PPP4R4Q6NUP7 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PPP4R4Q6NUP7 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.61■□□□□ 0.73
PPP4R4Q6NUP7 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PPP4R4Q6NUP7 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PPP4R4Q6NUP7 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PPP4R4Q6NUP7 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PPP4R4Q6NUP7 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PPP4R4Q6NUP7 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
PPP4R4Q6NUP7 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.61■□□□□ 0.73
PPP4R4Q6NUP7 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.6■□□□□ 0.73
PPP4R4Q6NUP7 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PPP4R4Q6NUP7 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
PPP4R4Q6NUP7 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
PPP4R4Q6NUP7 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
PPP4R4Q6NUP7 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PPP4R4Q6NUP7 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PPP4R4Q6NUP7 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PPP4R4Q6NUP7 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
PPP4R4Q6NUP7 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PPP4R4Q6NUP7 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PPP4R4Q6NUP7 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC19.6■□□□□ 0.73
PPP4R4Q6NUP7 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC19.6■□□□□ 0.73
PPP4R4Q6NUP7 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
PPP4R4Q6NUP7 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
PPP4R4Q6NUP7 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.6■□□□□ 0.73
PPP4R4Q6NUP7 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC19.6■□□□□ 0.73
PPP4R4Q6NUP7 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
PPP4R4Q6NUP7 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
PPP4R4Q6NUP7 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
PPP4R4Q6NUP7 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.59■□□□□ 0.73
PPP4R4Q6NUP7 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PPP4R4Q6NUP7 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PPP4R4Q6NUP7 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PPP4R4Q6NUP7 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC19.59■□□□□ 0.73
PPP4R4Q6NUP7 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PPP4R4Q6NUP7 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PPP4R4Q6NUP7 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PPP4R4Q6NUP7 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PPP4R4Q6NUP7 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms