Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
COL5A3P25940 PGM5P4-201ENST00000421970 445 ntBASIC26.25■■□□□ 1.79
COL5A3P25940 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC26.25■■□□□ 1.79
COL5A3P25940 RARRES2P10-201ENST00000564312 460 ntBASIC26.25■■□□□ 1.79
COL5A3P25940 GRAP-204ENST00000573099 846 ntTSL 3 BASIC26.25■■□□□ 1.79
COL5A3P25940 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC26.25■■□□□ 1.79
COL5A3P25940 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC26.25■■□□□ 1.79
COL5A3P25940 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC26.24■■□□□ 1.79
COL5A3P25940 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
COL5A3P25940 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC26.24■■□□□ 1.79
COL5A3P25940 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
COL5A3P25940 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
COL5A3P25940 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC26.24■■□□□ 1.79
COL5A3P25940 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
COL5A3P25940 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC26.24■■□□□ 1.79
COL5A3P25940 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
COL5A3P25940 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
COL5A3P25940 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC26.24■■□□□ 1.79
COL5A3P25940 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC26.24■■□□□ 1.79
COL5A3P25940 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
COL5A3P25940 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
COL5A3P25940 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
COL5A3P25940 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
COL5A3P25940 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
COL5A3P25940 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC26.23■■□□□ 1.79
COL5A3P25940 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
COL5A3P25940 KRT18P21-201ENST00000515767 1272 ntBASIC26.23■■□□□ 1.79
COL5A3P25940 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
COL5A3P25940 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC26.23■■□□□ 1.79
COL5A3P25940 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC26.23■■□□□ 1.79
COL5A3P25940 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
COL5A3P25940 C1orf229-201ENST00000623686 2258 ntBASIC26.23■■□□□ 1.79
COL5A3P25940 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC26.22■■□□□ 1.79
COL5A3P25940 TK2-204ENST00000525974 1178 ntTSL 2 BASIC26.22■■□□□ 1.79
COL5A3P25940 AC110285.5-201ENST00000611501 352 ntBASIC26.22■■□□□ 1.79
COL5A3P25940 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC26.22■■□□□ 1.79
COL5A3P25940 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
COL5A3P25940 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
COL5A3P25940 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
COL5A3P25940 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
COL5A3P25940 EXOC3-AS1-202ENST00000623673 1663 ntBASIC26.22■■□□□ 1.79
COL5A3P25940 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
COL5A3P25940 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC26.22■■□□□ 1.79
COL5A3P25940 TSPY15P-201ENST00000457163 923 ntBASIC26.22■■□□□ 1.79
COL5A3P25940 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC26.22■■□□□ 1.79
COL5A3P25940 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC26.22■■□□□ 1.79
COL5A3P25940 REXO1L12P-201ENST00000622156 912 ntBASIC26.22■■□□□ 1.79
COL5A3P25940 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
COL5A3P25940 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC26.22■■□□□ 1.79
COL5A3P25940 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC26.22■■□□□ 1.79
COL5A3P25940 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC26.22■■□□□ 1.79
COL5A3P25940 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC26.21■■□□□ 1.79
COL5A3P25940 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
COL5A3P25940 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
COL5A3P25940 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
COL5A3P25940 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
COL5A3P25940 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
COL5A3P25940 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC26.21■■□□□ 1.79
COL5A3P25940 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC26.21■■□□□ 1.79
COL5A3P25940 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
COL5A3P25940 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
COL5A3P25940 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC26.21■■□□□ 1.79
COL5A3P25940 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
COL5A3P25940 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC26.2■■□□□ 1.79
COL5A3P25940 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC26.2■■□□□ 1.79
COL5A3P25940 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC26.2■■□□□ 1.79
COL5A3P25940 AL135905.2-201ENST00000584934 1404 ntBASIC26.2■■□□□ 1.79
COL5A3P25940 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
COL5A3P25940 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
COL5A3P25940 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC26.2■■□□□ 1.78
COL5A3P25940 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC26.2■■□□□ 1.78
COL5A3P25940 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC26.2■■□□□ 1.78
COL5A3P25940 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
COL5A3P25940 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC26.19■■□□□ 1.78
COL5A3P25940 AC120498.8-201ENST00000614275 531 ntBASIC26.19■■□□□ 1.78
COL5A3P25940 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
COL5A3P25940 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC26.19■■□□□ 1.78
COL5A3P25940 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC26.19■■□□□ 1.78
COL5A3P25940 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC26.19■■□□□ 1.78
COL5A3P25940 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
COL5A3P25940 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC26.19■■□□□ 1.78
COL5A3P25940 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
COL5A3P25940 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
COL5A3P25940 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC26.19■■□□□ 1.78
COL5A3P25940 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC26.19■■□□□ 1.78
COL5A3P25940 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC26.19■■□□□ 1.78
COL5A3P25940 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
COL5A3P25940 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC26.18■■□□□ 1.78
COL5A3P25940 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
COL5A3P25940 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
COL5A3P25940 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
COL5A3P25940 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC26.18■■□□□ 1.78
COL5A3P25940 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC26.18■■□□□ 1.78
COL5A3P25940 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC26.18■■□□□ 1.78
COL5A3P25940 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
COL5A3P25940 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
COL5A3P25940 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC26.18■■□□□ 1.78
COL5A3P25940 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC26.18■■□□□ 1.78
COL5A3P25940 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
COL5A3P25940 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC26.18■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms