Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
HMGA1P17096 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
HMGA1P17096 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
HMGA1P17096 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC21.46■■□□□ 1.03
HMGA1P17096 RPS2P52-201ENST00000469610 820 ntBASIC21.46■■□□□ 1.03
HMGA1P17096 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC21.46■■□□□ 1.03
HMGA1P17096 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
HMGA1P17096 AC073648.6-201ENST00000641589 218 ntBASIC21.46■■□□□ 1.03
HMGA1P17096 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.46■■□□□ 1.03
HMGA1P17096 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC21.46■■□□□ 1.03
HMGA1P17096 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
HMGA1P17096 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
HMGA1P17096 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
HMGA1P17096 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
HMGA1P17096 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
HMGA1P17096 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
HMGA1P17096 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
HMGA1P17096 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
HMGA1P17096 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
HMGA1P17096 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC21.45■■□□□ 1.02
HMGA1P17096 GCSHP5-201ENST00000443090 522 ntBASIC21.45■■□□□ 1.02
HMGA1P17096 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
HMGA1P17096 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC21.45■■□□□ 1.02
HMGA1P17096 UNC93B4-201ENST00000505679 747 ntBASIC21.45■■□□□ 1.02
HMGA1P17096 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC21.45■■□□□ 1.02
HMGA1P17096 IRX5-204ENST00000560154 879 ntTSL 5 BASIC21.45■■□□□ 1.02
HMGA1P17096 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC21.45■■□□□ 1.02
HMGA1P17096 MMD2-204ENST00000612910 778 ntTSL 5 BASIC21.45■■□□□ 1.02
HMGA1P17096 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
HMGA1P17096 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC21.45■■□□□ 1.02
HMGA1P17096 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC21.45■■□□□ 1.02
HMGA1P17096 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC21.45■■□□□ 1.02
HMGA1P17096 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
HMGA1P17096 CRK-204ENST00000574295 1391 ntTSL 5 BASIC21.45■■□□□ 1.02
HMGA1P17096 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC21.45■■□□□ 1.02
HMGA1P17096 AC011484.1-201ENST00000377652 1995 ntBASIC21.45■■□□□ 1.02
HMGA1P17096 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
HMGA1P17096 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
HMGA1P17096 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
HMGA1P17096 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HMGA1P17096 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HMGA1P17096 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HMGA1P17096 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
HMGA1P17096 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
HMGA1P17096 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HMGA1P17096 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
HMGA1P17096 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HMGA1P17096 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
HMGA1P17096 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
HMGA1P17096 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HMGA1P17096 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HMGA1P17096 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
HMGA1P17096 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HMGA1P17096 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
HMGA1P17096 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HMGA1P17096 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HMGA1P17096 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HMGA1P17096 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
HMGA1P17096 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC21.44■■□□□ 1.02
HMGA1P17096 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC21.44■■□□□ 1.02
HMGA1P17096 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC21.43■■□□□ 1.02
HMGA1P17096 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
HMGA1P17096 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
HMGA1P17096 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
HMGA1P17096 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC21.43■■□□□ 1.02
HMGA1P17096 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
HMGA1P17096 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC21.43■■□□□ 1.02
HMGA1P17096 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC21.43■■□□□ 1.02
HMGA1P17096 DET1-205ENST00000558413 583 ntTSL 4 BASIC21.43■■□□□ 1.02
HMGA1P17096 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC21.43■■□□□ 1.02
HMGA1P17096 AL356652.1-201ENST00000615962 565 ntBASIC21.43■■□□□ 1.02
HMGA1P17096 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
HMGA1P17096 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC21.43■■□□□ 1.02
HMGA1P17096 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
HMGA1P17096 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
HMGA1P17096 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
HMGA1P17096 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
HMGA1P17096 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
HMGA1P17096 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC21.42■■□□□ 1.02
HMGA1P17096 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
HMGA1P17096 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
HMGA1P17096 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
HMGA1P17096 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC21.42■■□□□ 1.02
HMGA1P17096 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
HMGA1P17096 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC21.42■■□□□ 1.02
HMGA1P17096 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.42■■□□□ 1.02
HMGA1P17096 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
HMGA1P17096 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC21.42■■□□□ 1.02
HMGA1P17096 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
HMGA1P17096 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC21.42■■□□□ 1.02
HMGA1P17096 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
HMGA1P17096 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.41■■□□□ 1.02
HMGA1P17096 BID-212ENST00000614949 1988 ntTSL 5 BASIC21.41■■□□□ 1.02
HMGA1P17096 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
HMGA1P17096 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
HMGA1P17096 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
HMGA1P17096 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
HMGA1P17096 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
HMGA1P17096 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
HMGA1P17096 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms