Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.02■□□□□ 0.64
NKX2-2O95096 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC19.02■□□□□ 0.64
NKX2-2O95096 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
NKX2-2O95096 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
NKX2-2O95096 FAM21FP-204ENST00000608637 956 ntBASIC19.02■□□□□ 0.64
NKX2-2O95096 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
NKX2-2O95096 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
NKX2-2O95096 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.01■□□□□ 0.63
NKX2-2O95096 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
NKX2-2O95096 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
NKX2-2O95096 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
NKX2-2O95096 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
NKX2-2O95096 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
NKX2-2O95096 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
NKX2-2O95096 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.01■□□□□ 0.63
NKX2-2O95096 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
NKX2-2O95096 PARL-206ENST00000435888 1098 ntTSL 5 BASIC19.01■□□□□ 0.63
NKX2-2O95096 CNN2P6-201ENST00000439038 900 ntBASIC19.01■□□□□ 0.63
NKX2-2O95096 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.01■□□□□ 0.63
NKX2-2O95096 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.01■□□□□ 0.63
NKX2-2O95096 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
NKX2-2O95096 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
NKX2-2O95096 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
NKX2-2O95096 MIR2861-201ENST00000636310 90 ntBASIC19.01■□□□□ 0.63
NKX2-2O95096 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
NKX2-2O95096 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
NKX2-2O95096 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
NKX2-2O95096 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
NKX2-2O95096 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.01■□□□□ 0.63
NKX2-2O95096 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
NKX2-2O95096 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
NKX2-2O95096 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
NKX2-2O95096 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC19■□□□□ 0.63
NKX2-2O95096 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
NKX2-2O95096 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
NKX2-2O95096 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19■□□□□ 0.63
NKX2-2O95096 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
NKX2-2O95096 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
NKX2-2O95096 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
NKX2-2O95096 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19■□□□□ 0.63
NKX2-2O95096 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19■□□□□ 0.63
NKX2-2O95096 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
NKX2-2O95096 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC19■□□□□ 0.63
NKX2-2O95096 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
NKX2-2O95096 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
NKX2-2O95096 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
NKX2-2O95096 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19■□□□□ 0.63
NKX2-2O95096 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19■□□□□ 0.63
NKX2-2O95096 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
NKX2-2O95096 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
NKX2-2O95096 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19■□□□□ 0.63
NKX2-2O95096 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19■□□□□ 0.63
NKX2-2O95096 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
NKX2-2O95096 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
NKX2-2O95096 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
NKX2-2O95096 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC18.99■□□□□ 0.63
NKX2-2O95096 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC18.99■□□□□ 0.63
NKX2-2O95096 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
NKX2-2O95096 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
NKX2-2O95096 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
NKX2-2O95096 VMO1-204ENST00000441199 741 ntTSL 2 BASIC18.99■□□□□ 0.63
NKX2-2O95096 PBX1-209ENST00000485769 834 ntTSL 2 BASIC18.99■□□□□ 0.63
NKX2-2O95096 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.99■□□□□ 0.63
NKX2-2O95096 AC092437.1-201ENST00000624794 1048 ntBASIC18.99■□□□□ 0.63
NKX2-2O95096 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
NKX2-2O95096 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC18.99■□□□□ 0.63
NKX2-2O95096 AL157384.1-201ENST00000445995 2473 ntBASIC18.99■□□□□ 0.63
NKX2-2O95096 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC18.99■□□□□ 0.63
NKX2-2O95096 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
NKX2-2O95096 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
NKX2-2O95096 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC18.99■□□□□ 0.63
NKX2-2O95096 AP005212.1-201ENST00000581547 1997 ntBASIC18.99■□□□□ 0.63
NKX2-2O95096 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX2-2O95096 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
NKX2-2O95096 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
NKX2-2O95096 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX2-2O95096 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX2-2O95096 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC18.98■□□□□ 0.63
NKX2-2O95096 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX2-2O95096 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX2-2O95096 GABARAPL3-202ENST00000624044 1851 ntBASIC18.98■□□□□ 0.63
NKX2-2O95096 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC18.98■□□□□ 0.63
NKX2-2O95096 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX2-2O95096 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX2-2O95096 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX2-2O95096 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.98■□□□□ 0.63
NKX2-2O95096 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
NKX2-2O95096 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC18.98■□□□□ 0.63
NKX2-2O95096 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
NKX2-2O95096 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX2-2O95096 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX2-2O95096 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
NKX2-2O95096 AC073314.1-201ENST00000568729 2216 ntBASIC18.97■□□□□ 0.63
NKX2-2O95096 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
NKX2-2O95096 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
NKX2-2O95096 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC18.97■□□□□ 0.63
NKX2-2O95096 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
NKX2-2O95096 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
NKX2-2O95096 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
NKX2-2O95096 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms