Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LMX1BO60663 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LMX1BO60663 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18.06■□□□□ 0.48
LMX1BO60663 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
LMX1BO60663 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LMX1BO60663 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
LMX1BO60663 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
LMX1BO60663 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC18.06■□□□□ 0.48
LMX1BO60663 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC18.06■□□□□ 0.48
LMX1BO60663 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC18.06■□□□□ 0.48
LMX1BO60663 AL109923.1-201ENST00000618799 583 ntBASIC18.06■□□□□ 0.48
LMX1BO60663 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LMX1BO60663 AC027702.1-201ENST00000563810 1770 ntBASIC18.06■□□□□ 0.48
LMX1BO60663 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LMX1BO60663 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LMX1BO60663 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LMX1BO60663 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LMX1BO60663 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LMX1BO60663 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
LMX1BO60663 AL355802.2-201ENST00000402069 882 ntBASIC18.05■□□□□ 0.48
LMX1BO60663 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LMX1BO60663 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC18.05■□□□□ 0.48
LMX1BO60663 RNF146-206ENST00000480444 843 ntTSL 2 BASIC18.05■□□□□ 0.48
LMX1BO60663 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC18.05■□□□□ 0.48
LMX1BO60663 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC18.05■□□□□ 0.48
LMX1BO60663 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC18.05■□□□□ 0.48
LMX1BO60663 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LMX1BO60663 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LMX1BO60663 GABARAPL3-202ENST00000624044 1851 ntBASIC18.05■□□□□ 0.48
LMX1BO60663 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LMX1BO60663 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.05■□□□□ 0.48
LMX1BO60663 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
LMX1BO60663 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LMX1BO60663 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.04■□□□□ 0.48
LMX1BO60663 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
LMX1BO60663 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LMX1BO60663 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
LMX1BO60663 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LMX1BO60663 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LMX1BO60663 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC18.04■□□□□ 0.48
LMX1BO60663 FXN-202ENST00000396364 980 ntTSL 5 BASIC18.04■□□□□ 0.48
LMX1BO60663 KRT18P11-201ENST00000435214 1283 ntBASIC18.04■□□□□ 0.48
LMX1BO60663 MAP2K4P1-201ENST00000438453 1195 ntBASIC18.04■□□□□ 0.48
LMX1BO60663 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC18.04■□□□□ 0.48
LMX1BO60663 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.04■□□□□ 0.48
LMX1BO60663 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LMX1BO60663 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LMX1BO60663 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LMX1BO60663 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LMX1BO60663 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
LMX1BO60663 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
LMX1BO60663 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
LMX1BO60663 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LMX1BO60663 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LMX1BO60663 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LMX1BO60663 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
LMX1BO60663 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
LMX1BO60663 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LMX1BO60663 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LMX1BO60663 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.03■□□□□ 0.48
LMX1BO60663 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LMX1BO60663 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC18.03■□□□□ 0.48
LMX1BO60663 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC18.03■□□□□ 0.48
LMX1BO60663 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC18.03■□□□□ 0.48
LMX1BO60663 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC18.03■□□□□ 0.48
LMX1BO60663 TESC-206ENST00000541210 936 ntTSL 3 BASIC18.03■□□□□ 0.48
LMX1BO60663 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LMX1BO60663 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
LMX1BO60663 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
LMX1BO60663 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.03■□□□□ 0.48
LMX1BO60663 AC061975.6-201ENST00000579045 1553 ntBASIC18.03■□□□□ 0.48
LMX1BO60663 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
LMX1BO60663 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.03■□□□□ 0.48
LMX1BO60663 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.03■□□□□ 0.48
LMX1BO60663 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC18.03■□□□□ 0.48
LMX1BO60663 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LMX1BO60663 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LMX1BO60663 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC18.02■□□□□ 0.48
LMX1BO60663 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.02■□□□□ 0.48
LMX1BO60663 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
LMX1BO60663 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
LMX1BO60663 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LMX1BO60663 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LMX1BO60663 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
LMX1BO60663 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
LMX1BO60663 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
LMX1BO60663 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC18.02■□□□□ 0.48
LMX1BO60663 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC18.02■□□□□ 0.48
LMX1BO60663 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC18.02■□□□□ 0.48
LMX1BO60663 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
LMX1BO60663 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC18.02■□□□□ 0.48
LMX1BO60663 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC18.02■□□□□ 0.47
LMX1BO60663 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.02■□□□□ 0.47
LMX1BO60663 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
LMX1BO60663 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.47
LMX1BO60663 AC007225.1-201ENST00000566331 1836 ntBASIC18.02■□□□□ 0.47
LMX1BO60663 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
LMX1BO60663 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
LMX1BO60663 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
LMX1BO60663 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.02■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms