Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
NPHP1O15259 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
NPHP1O15259 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC25.93■■□□□ 1.74
NPHP1O15259 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC25.93■■□□□ 1.74
NPHP1O15259 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC25.93■■□□□ 1.74
NPHP1O15259 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
NPHP1O15259 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
NPHP1O15259 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC25.93■■□□□ 1.74
NPHP1O15259 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC25.92■■□□□ 1.74
NPHP1O15259 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC25.92■■□□□ 1.74
NPHP1O15259 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
NPHP1O15259 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC25.92■■□□□ 1.74
NPHP1O15259 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
NPHP1O15259 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
NPHP1O15259 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
NPHP1O15259 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC25.92■■□□□ 1.74
NPHP1O15259 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
NPHP1O15259 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC25.92■■□□□ 1.74
NPHP1O15259 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC25.92■■□□□ 1.74
NPHP1O15259 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
NPHP1O15259 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC25.92■■□□□ 1.74
NPHP1O15259 FAM99A-202ENST00000538190 1989 ntBASIC25.91■■□□□ 1.74
NPHP1O15259 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC25.91■■□□□ 1.74
NPHP1O15259 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
NPHP1O15259 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
NPHP1O15259 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
NPHP1O15259 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC25.91■■□□□ 1.74
NPHP1O15259 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC25.91■■□□□ 1.74
NPHP1O15259 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
NPHP1O15259 REXO1L12P-201ENST00000622156 912 ntBASIC25.91■■□□□ 1.74
NPHP1O15259 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC25.91■■□□□ 1.74
NPHP1O15259 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
NPHP1O15259 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC25.91■■□□□ 1.74
NPHP1O15259 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
NPHP1O15259 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC25.91■■□□□ 1.74
NPHP1O15259 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
NPHP1O15259 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC25.91■■□□□ 1.74
NPHP1O15259 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
NPHP1O15259 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC25.9■■□□□ 1.74
NPHP1O15259 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC25.9■■□□□ 1.74
NPHP1O15259 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC25.9■■□□□ 1.74
NPHP1O15259 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC25.9■■□□□ 1.74
NPHP1O15259 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC25.9■■□□□ 1.74
NPHP1O15259 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC25.9■■□□□ 1.74
NPHP1O15259 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
NPHP1O15259 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
NPHP1O15259 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC25.9■■□□□ 1.74
NPHP1O15259 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
NPHP1O15259 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
NPHP1O15259 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC25.9■■□□□ 1.74
NPHP1O15259 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC25.9■■□□□ 1.74
NPHP1O15259 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
NPHP1O15259 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
NPHP1O15259 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC25.89■■□□□ 1.74
NPHP1O15259 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
NPHP1O15259 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC25.89■■□□□ 1.74
NPHP1O15259 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC25.89■■□□□ 1.74
NPHP1O15259 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC25.89■■□□□ 1.74
NPHP1O15259 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC25.89■■□□□ 1.74
NPHP1O15259 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
NPHP1O15259 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC25.89■■□□□ 1.74
NPHP1O15259 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC25.89■■□□□ 1.74
NPHP1O15259 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
NPHP1O15259 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC25.89■■□□□ 1.73
NPHP1O15259 AC116050.2-201ENST00000612102 1779 ntBASIC25.89■■□□□ 1.73
NPHP1O15259 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
NPHP1O15259 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
NPHP1O15259 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
NPHP1O15259 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC25.88■■□□□ 1.73
NPHP1O15259 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC25.88■■□□□ 1.73
NPHP1O15259 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
NPHP1O15259 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC25.88■■□□□ 1.73
NPHP1O15259 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC25.88■■□□□ 1.73
NPHP1O15259 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
NPHP1O15259 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
NPHP1O15259 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
NPHP1O15259 MDFI-202ENST00000373050 809 ntTSL 2 BASIC25.88■■□□□ 1.73
NPHP1O15259 ISG20-202ENST00000379224 540 ntTSL 3 BASIC25.88■■□□□ 1.73
NPHP1O15259 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC25.88■■□□□ 1.73
NPHP1O15259 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
NPHP1O15259 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC25.88■■□□□ 1.73
NPHP1O15259 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
NPHP1O15259 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC25.88■■□□□ 1.73
NPHP1O15259 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC25.88■■□□□ 1.73
NPHP1O15259 C1orf229-201ENST00000623686 2258 ntBASIC25.88■■□□□ 1.73
NPHP1O15259 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC25.88■■□□□ 1.73
NPHP1O15259 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
NPHP1O15259 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
NPHP1O15259 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
NPHP1O15259 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC25.87■■□□□ 1.73
NPHP1O15259 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC25.87■■□□□ 1.73
NPHP1O15259 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
NPHP1O15259 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC25.87■■□□□ 1.73
NPHP1O15259 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
NPHP1O15259 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
NPHP1O15259 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC25.87■■□□□ 1.73
NPHP1O15259 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
NPHP1O15259 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
NPHP1O15259 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC25.87■■□□□ 1.73
NPHP1O15259 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC25.86■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms