Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.46■□□□□ 0.38
SDCBPO00560 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
SDCBPO00560 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC17.45■□□□□ 0.38
SDCBPO00560 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SDCBPO00560 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
SDCBPO00560 AC020907.5-201ENST00000624372 1936 ntBASIC17.45■□□□□ 0.38
SDCBPO00560 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
SDCBPO00560 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SDCBPO00560 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
SDCBPO00560 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC17.45■□□□□ 0.38
SDCBPO00560 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SDCBPO00560 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SDCBPO00560 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC17.45■□□□□ 0.38
SDCBPO00560 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC17.45■□□□□ 0.38
SDCBPO00560 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC17.45■□□□□ 0.38
SDCBPO00560 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
SDCBPO00560 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
SDCBPO00560 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
SDCBPO00560 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
SDCBPO00560 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SDCBPO00560 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC17.45■□□□□ 0.38
SDCBPO00560 AC005224.4-201ENST00000583262 1652 ntBASIC17.45■□□□□ 0.38
SDCBPO00560 MPST-204ENST00000404393 1329 ntTSL 5 BASIC17.45■□□□□ 0.38
SDCBPO00560 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SDCBPO00560 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SDCBPO00560 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SDCBPO00560 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SDCBPO00560 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SDCBPO00560 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC17.44■□□□□ 0.38
SDCBPO00560 FXN-202ENST00000396364 980 ntTSL 5 BASIC17.44■□□□□ 0.38
SDCBPO00560 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC17.44■□□□□ 0.38
SDCBPO00560 AC005837.3-201ENST00000612163 286 ntBASIC17.44■□□□□ 0.38
SDCBPO00560 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC17.44■□□□□ 0.38
SDCBPO00560 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
SDCBPO00560 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SDCBPO00560 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC17.44■□□□□ 0.38
SDCBPO00560 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SDCBPO00560 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SDCBPO00560 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SDCBPO00560 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SDCBPO00560 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
SDCBPO00560 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SDCBPO00560 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SDCBPO00560 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC17.43■□□□□ 0.38
SDCBPO00560 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SDCBPO00560 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
SDCBPO00560 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
SDCBPO00560 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SDCBPO00560 HYI-206ENST00000372434 1025 ntTSL 5 BASIC17.43■□□□□ 0.38
SDCBPO00560 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SDCBPO00560 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC17.43■□□□□ 0.38
SDCBPO00560 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SDCBPO00560 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SDCBPO00560 AC012414.1-201ENST00000556676 535 ntBASIC17.43■□□□□ 0.38
SDCBPO00560 AL354811.1-201ENST00000610286 706 ntBASIC17.43■□□□□ 0.38
SDCBPO00560 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SDCBPO00560 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SDCBPO00560 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SDCBPO00560 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SDCBPO00560 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
SDCBPO00560 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
SDCBPO00560 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SDCBPO00560 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC17.43■□□□□ 0.38
SDCBPO00560 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
SDCBPO00560 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
SDCBPO00560 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SDCBPO00560 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SDCBPO00560 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SDCBPO00560 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
SDCBPO00560 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC17.42■□□□□ 0.38
SDCBPO00560 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SDCBPO00560 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SDCBPO00560 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC17.42■□□□□ 0.38
SDCBPO00560 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC17.42■□□□□ 0.38
SDCBPO00560 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SDCBPO00560 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
SDCBPO00560 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC17.42■□□□□ 0.38
SDCBPO00560 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SDCBPO00560 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
SDCBPO00560 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SDCBPO00560 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SDCBPO00560 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC17.42■□□□□ 0.38
SDCBPO00560 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC17.42■□□□□ 0.38
SDCBPO00560 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC17.42■□□□□ 0.38
SDCBPO00560 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SDCBPO00560 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SDCBPO00560 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SDCBPO00560 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
SDCBPO00560 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
SDCBPO00560 AC055733.4-201ENST00000638462 1354 ntBASIC17.41■□□□□ 0.38
SDCBPO00560 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
SDCBPO00560 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC17.41■□□□□ 0.38
SDCBPO00560 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC17.41■□□□□ 0.38
SDCBPO00560 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC17.41■□□□□ 0.38
SDCBPO00560 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
SDCBPO00560 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC17.41■□□□□ 0.38
SDCBPO00560 DET1-207ENST00000564406 2315 ntTSL 2 BASIC17.41■□□□□ 0.38
SDCBPO00560 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SDCBPO00560 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SDCBPO00560 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms