Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
SLC28A1O00337 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
SLC28A1O00337 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SLC28A1O00337 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SLC28A1O00337 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SLC28A1O00337 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SLC28A1O00337 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.79■□□□□ 0.76
SLC28A1O00337 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SLC28A1O00337 AK1-201ENST00000223836 736 ntTSL 3 BASIC19.79■□□□□ 0.76
SLC28A1O00337 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC19.79■□□□□ 0.76
SLC28A1O00337 DUX4L2-201ENST00000561772 1275 ntBASIC19.79■□□□□ 0.76
SLC28A1O00337 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.79■□□□□ 0.76
SLC28A1O00337 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.79■□□□□ 0.76
SLC28A1O00337 DUX4L6-201ENST00000626483 1275 ntBASIC19.79■□□□□ 0.76
SLC28A1O00337 DUX4L1-201ENST00000627662 1275 ntBASIC19.79■□□□□ 0.76
SLC28A1O00337 DUX4L8-201ENST00000629013 1275 ntBASIC19.79■□□□□ 0.76
SLC28A1O00337 DUX4L3-201ENST00000630187 1275 ntBASIC19.79■□□□□ 0.76
SLC28A1O00337 DUX4L7-201ENST00000630678 1275 ntBASIC19.79■□□□□ 0.76
SLC28A1O00337 DUX4L5-201ENST00000630834 1275 ntBASIC19.79■□□□□ 0.76
SLC28A1O00337 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SLC28A1O00337 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SLC28A1O00337 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SLC28A1O00337 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.79■□□□□ 0.76
SLC28A1O00337 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SLC28A1O00337 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SLC28A1O00337 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.79■□□□□ 0.76
SLC28A1O00337 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.79■□□□□ 0.76
SLC28A1O00337 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.78■□□□□ 0.76
SLC28A1O00337 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
SLC28A1O00337 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SLC28A1O00337 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SLC28A1O00337 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SLC28A1O00337 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SLC28A1O00337 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.78■□□□□ 0.76
SLC28A1O00337 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC19.78■□□□□ 0.76
SLC28A1O00337 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.78■□□□□ 0.76
SLC28A1O00337 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SLC28A1O00337 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SLC28A1O00337 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SLC28A1O00337 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
SLC28A1O00337 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SLC28A1O00337 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SLC28A1O00337 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SLC28A1O00337 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SLC28A1O00337 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SLC28A1O00337 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SLC28A1O00337 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SLC28A1O00337 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SLC28A1O00337 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.77■□□□□ 0.76
SLC28A1O00337 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.77■□□□□ 0.76
SLC28A1O00337 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SLC28A1O00337 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SLC28A1O00337 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SLC28A1O00337 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
SLC28A1O00337 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SLC28A1O00337 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
SLC28A1O00337 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SLC28A1O00337 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SLC28A1O00337 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.77■□□□□ 0.76
SLC28A1O00337 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
SLC28A1O00337 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
SLC28A1O00337 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
SLC28A1O00337 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.75
SLC28A1O00337 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
SLC28A1O00337 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.76■□□□□ 0.75
SLC28A1O00337 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.76■□□□□ 0.75
SLC28A1O00337 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SLC28A1O00337 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SLC28A1O00337 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SLC28A1O00337 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.76■□□□□ 0.75
SLC28A1O00337 AL162377.1-201ENST00000618844 1793 ntBASIC19.76■□□□□ 0.75
SLC28A1O00337 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SLC28A1O00337 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
SLC28A1O00337 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SLC28A1O00337 AC123595.1-201ENST00000440769 1046 ntBASIC19.76■□□□□ 0.75
SLC28A1O00337 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
SLC28A1O00337 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SLC28A1O00337 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
SLC28A1O00337 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
SLC28A1O00337 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.75■□□□□ 0.75
SLC28A1O00337 AC092720.2-201ENST00000602388 1665 ntBASIC19.75■□□□□ 0.75
SLC28A1O00337 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
SLC28A1O00337 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SLC28A1O00337 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.75■□□□□ 0.75
SLC28A1O00337 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SLC28A1O00337 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SLC28A1O00337 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.75■□□□□ 0.75
SLC28A1O00337 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
SLC28A1O00337 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SLC28A1O00337 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.75■□□□□ 0.75
SLC28A1O00337 AP001160.3-201ENST00000601484 763 ntBASIC19.75■□□□□ 0.75
SLC28A1O00337 AC104187.1-201ENST00000607510 612 ntBASIC19.75■□□□□ 0.75
SLC28A1O00337 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.75■□□□□ 0.75
SLC28A1O00337 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SLC28A1O00337 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SLC28A1O00337 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.75■□□□□ 0.75
SLC28A1O00337 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SLC28A1O00337 AC116050.2-201ENST00000612102 1779 ntBASIC19.75■□□□□ 0.75
SLC28A1O00337 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SLC28A1O00337 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms