Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SCN3AQ9NY46 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.57■□□□□ 0.72
SCN3AQ9NY46 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SCN3AQ9NY46 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
SCN3AQ9NY46 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.56■□□□□ 0.72
SCN3AQ9NY46 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SCN3AQ9NY46 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SCN3AQ9NY46 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
SCN3AQ9NY46 GPX1P1-201ENST00000388829 606 ntBASIC19.56■□□□□ 0.72
SCN3AQ9NY46 GUSBP6-202ENST00000438529 1198 ntBASIC19.56■□□□□ 0.72
SCN3AQ9NY46 MDK-213ENST00000617138 635 ntTSL 2 BASIC19.56■□□□□ 0.72
SCN3AQ9NY46 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC19.56■□□□□ 0.72
SCN3AQ9NY46 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.56■□□□□ 0.72
SCN3AQ9NY46 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SCN3AQ9NY46 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SCN3AQ9NY46 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SCN3AQ9NY46 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SCN3AQ9NY46 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.56■□□□□ 0.72
SCN3AQ9NY46 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC19.56■□□□□ 0.72
SCN3AQ9NY46 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
SCN3AQ9NY46 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
SCN3AQ9NY46 AL591742.1-201ENST00000604433 565 ntBASIC19.56■□□□□ 0.72
SCN3AQ9NY46 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.56■□□□□ 0.72
SCN3AQ9NY46 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SCN3AQ9NY46 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SCN3AQ9NY46 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SCN3AQ9NY46 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SCN3AQ9NY46 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SCN3AQ9NY46 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SCN3AQ9NY46 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SCN3AQ9NY46 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SCN3AQ9NY46 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
SCN3AQ9NY46 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SCN3AQ9NY46 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC19.55■□□□□ 0.72
SCN3AQ9NY46 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC19.55■□□□□ 0.72
SCN3AQ9NY46 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
SCN3AQ9NY46 AC006128.1-201ENST00000624704 1661 ntBASIC19.55■□□□□ 0.72
SCN3AQ9NY46 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.55■□□□□ 0.72
SCN3AQ9NY46 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
SCN3AQ9NY46 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SCN3AQ9NY46 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
SCN3AQ9NY46 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SCN3AQ9NY46 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
SCN3AQ9NY46 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC19.55■□□□□ 0.72
SCN3AQ9NY46 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SCN3AQ9NY46 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SCN3AQ9NY46 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
SCN3AQ9NY46 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.54■□□□□ 0.72
SCN3AQ9NY46 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC19.54■□□□□ 0.72
SCN3AQ9NY46 AC133552.2-202ENST00000575694 574 ntBASIC19.54■□□□□ 0.72
SCN3AQ9NY46 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SCN3AQ9NY46 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SCN3AQ9NY46 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
SCN3AQ9NY46 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.54■□□□□ 0.72
SCN3AQ9NY46 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
SCN3AQ9NY46 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
SCN3AQ9NY46 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SCN3AQ9NY46 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SCN3AQ9NY46 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SCN3AQ9NY46 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
SCN3AQ9NY46 SLC29A4P1-201ENST00000398760 971 ntBASIC19.54■□□□□ 0.72
SCN3AQ9NY46 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.54■□□□□ 0.72
SCN3AQ9NY46 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SCN3AQ9NY46 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SCN3AQ9NY46 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
SCN3AQ9NY46 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SCN3AQ9NY46 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SCN3AQ9NY46 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SCN3AQ9NY46 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
SCN3AQ9NY46 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.53■□□□□ 0.72
SCN3AQ9NY46 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.53■□□□□ 0.72
SCN3AQ9NY46 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SCN3AQ9NY46 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SCN3AQ9NY46 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SCN3AQ9NY46 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.53■□□□□ 0.72
SCN3AQ9NY46 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC19.53■□□□□ 0.72
SCN3AQ9NY46 AC104771.1-201ENST00000603335 964 ntBASIC19.53■□□□□ 0.72
SCN3AQ9NY46 AL356652.1-201ENST00000615962 565 ntBASIC19.53■□□□□ 0.72
SCN3AQ9NY46 MIR2861-201ENST00000636310 90 ntBASIC19.53■□□□□ 0.72
SCN3AQ9NY46 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC19.53■□□□□ 0.72
SCN3AQ9NY46 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
SCN3AQ9NY46 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SCN3AQ9NY46 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SCN3AQ9NY46 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SCN3AQ9NY46 AC010980.2-201ENST00000587099 1412 ntBASIC19.53■□□□□ 0.72
SCN3AQ9NY46 CDV3P1-201ENST00000471403 739 ntBASIC19.52■□□□□ 0.72
SCN3AQ9NY46 AC069236.1-201ENST00000604339 616 ntBASIC19.52■□□□□ 0.72
SCN3AQ9NY46 AL109923.1-201ENST00000618799 583 ntBASIC19.52■□□□□ 0.72
SCN3AQ9NY46 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SCN3AQ9NY46 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SCN3AQ9NY46 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.52■□□□□ 0.72
SCN3AQ9NY46 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.52■□□□□ 0.72
SCN3AQ9NY46 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SCN3AQ9NY46 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SCN3AQ9NY46 PLK5-205ENST00000642079 1969 ntBASIC19.52■□□□□ 0.72
SCN3AQ9NY46 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SCN3AQ9NY46 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SCN3AQ9NY46 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.52■□□□□ 0.72
SCN3AQ9NY46 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.72
SCN3AQ9NY46 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms