Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PCDH9Q9HC56 BID-203ENST00000399765 1879 ntTSL 2 BASIC21.3■■□□□ 1
PCDH9Q9HC56 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PCDH9Q9HC56 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC21.3■■□□□ 1
PCDH9Q9HC56 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC21.3■■□□□ 1
PCDH9Q9HC56 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
PCDH9Q9HC56 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC21.29■■□□□ 1
PCDH9Q9HC56 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PCDH9Q9HC56 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PCDH9Q9HC56 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21.29■■□□□ 1
PCDH9Q9HC56 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.29■■□□□ 1
PCDH9Q9HC56 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC21.29■■□□□ 1
PCDH9Q9HC56 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC21.29■■□□□ 1
PCDH9Q9HC56 AC061975.6-201ENST00000579045 1553 ntBASIC21.29■■□□□ 1
PCDH9Q9HC56 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PCDH9Q9HC56 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.29■■□□□ 1
PCDH9Q9HC56 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PCDH9Q9HC56 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC21.29■■□□□ 1
PCDH9Q9HC56 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC21.29■■□□□ 1
PCDH9Q9HC56 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PCDH9Q9HC56 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC21.29■■□□□ 1
PCDH9Q9HC56 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC21.29■■□□□ 1
PCDH9Q9HC56 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC21.29■■□□□ 1
PCDH9Q9HC56 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PCDH9Q9HC56 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PCDH9Q9HC56 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PCDH9Q9HC56 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PCDH9Q9HC56 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PCDH9Q9HC56 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
PCDH9Q9HC56 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
PCDH9Q9HC56 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC21.28■■□□□ 1
PCDH9Q9HC56 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PCDH9Q9HC56 AC020907.5-201ENST00000624372 1936 ntBASIC21.28■■□□□ 1
PCDH9Q9HC56 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PCDH9Q9HC56 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PCDH9Q9HC56 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC21.28■■□□□ 1
PCDH9Q9HC56 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC21.28■■□□□ 1
PCDH9Q9HC56 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
PCDH9Q9HC56 KRT18P5-201ENST00000436075 1291 ntBASIC21.28■■□□□ 1
PCDH9Q9HC56 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
PCDH9Q9HC56 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC21.28■■□□□ 1
PCDH9Q9HC56 AC138907.5-202ENST00000569484 235 ntBASIC21.28■■□□□ 1
PCDH9Q9HC56 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PCDH9Q9HC56 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
PCDH9Q9HC56 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PCDH9Q9HC56 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC21.28■■□□□ 1
PCDH9Q9HC56 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC21.28■■□□□ 1
PCDH9Q9HC56 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC21.28■■□□□ 1
PCDH9Q9HC56 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.28■■□□□ 1
PCDH9Q9HC56 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.28■■□□□ 1
PCDH9Q9HC56 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.28■■□□□ 1
PCDH9Q9HC56 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
PCDH9Q9HC56 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
PCDH9Q9HC56 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
PCDH9Q9HC56 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC21.27■■□□□ 1
PCDH9Q9HC56 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
PCDH9Q9HC56 AC011484.1-201ENST00000377652 1995 ntBASIC21.27■■□□□ 1
PCDH9Q9HC56 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PCDH9Q9HC56 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PCDH9Q9HC56 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC21.27■■□□□ 1
PCDH9Q9HC56 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC21.27■■□□□ 1
PCDH9Q9HC56 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC21.27■■□□□ 1
PCDH9Q9HC56 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC21.27■■□□□ 1
PCDH9Q9HC56 AL162430.1-201ENST00000480705 870 ntBASIC21.27■■□□□ 1
PCDH9Q9HC56 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC21.27■■□□□ 1
PCDH9Q9HC56 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21.27■■□□□ 1
PCDH9Q9HC56 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PCDH9Q9HC56 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
PCDH9Q9HC56 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC21.27■□□□□ 0.99
PCDH9Q9HC56 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC21.27■□□□□ 0.99
PCDH9Q9HC56 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC21.27■□□□□ 0.99
PCDH9Q9HC56 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
PCDH9Q9HC56 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC21.26■□□□□ 0.99
PCDH9Q9HC56 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
PCDH9Q9HC56 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
PCDH9Q9HC56 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
PCDH9Q9HC56 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
PCDH9Q9HC56 KRT19P1-201ENST00000405746 1186 ntBASIC21.26■□□□□ 0.99
PCDH9Q9HC56 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC21.26■□□□□ 0.99
PCDH9Q9HC56 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
PCDH9Q9HC56 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC21.26■□□□□ 0.99
PCDH9Q9HC56 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PCDH9Q9HC56 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
PCDH9Q9HC56 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
PCDH9Q9HC56 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC21.26■□□□□ 0.99
PCDH9Q9HC56 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
PCDH9Q9HC56 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCDH9Q9HC56 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.25■□□□□ 0.99
PCDH9Q9HC56 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCDH9Q9HC56 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC21.25■□□□□ 0.99
PCDH9Q9HC56 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC21.25■□□□□ 0.99
PCDH9Q9HC56 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC21.25■□□□□ 0.99
PCDH9Q9HC56 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC21.25■□□□□ 0.99
PCDH9Q9HC56 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCDH9Q9HC56 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC21.25■□□□□ 0.99
PCDH9Q9HC56 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCDH9Q9HC56 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
PCDH9Q9HC56 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
PCDH9Q9HC56 FP700111.2-201ENST00000619190 1892 ntBASIC21.24■□□□□ 0.99
PCDH9Q9HC56 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms