Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC31.35■■■□□ 2.61
SCAPERQ9BY12 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
SCAPERQ9BY12 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC31.35■■■□□ 2.61
SCAPERQ9BY12 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC31.35■■■□□ 2.61
SCAPERQ9BY12 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
SCAPERQ9BY12 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC31.34■■■□□ 2.61
SCAPERQ9BY12 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC31.34■■■□□ 2.61
SCAPERQ9BY12 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
SCAPERQ9BY12 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC31.34■■■□□ 2.61
SCAPERQ9BY12 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
SCAPERQ9BY12 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
SCAPERQ9BY12 AC006557.6-201ENST00000623071 864 ntBASIC31.34■■■□□ 2.61
SCAPERQ9BY12 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC31.34■■■□□ 2.61
SCAPERQ9BY12 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
SCAPERQ9BY12 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC31.34■■■□□ 2.61
SCAPERQ9BY12 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC31.34■■■□□ 2.61
SCAPERQ9BY12 AC010542.4-201ENST00000563151 1910 ntBASIC31.34■■■□□ 2.61
SCAPERQ9BY12 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC31.34■■■□□ 2.61
SCAPERQ9BY12 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
SCAPERQ9BY12 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC31.34■■■□□ 2.61
SCAPERQ9BY12 STX5-203ENST00000394690 1568 ntTSL 5 BASIC31.33■■■□□ 2.61
SCAPERQ9BY12 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
SCAPERQ9BY12 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
SCAPERQ9BY12 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
SCAPERQ9BY12 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC31.33■■■□□ 2.61
SCAPERQ9BY12 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC31.32■■■□□ 2.61
SCAPERQ9BY12 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC31.32■■■□□ 2.61
SCAPERQ9BY12 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC31.32■■■□□ 2.61
SCAPERQ9BY12 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC31.32■■■□□ 2.6
SCAPERQ9BY12 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
SCAPERQ9BY12 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
SCAPERQ9BY12 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC31.32■■■□□ 2.6
SCAPERQ9BY12 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC31.32■■■□□ 2.6
SCAPERQ9BY12 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC31.32■■■□□ 2.6
SCAPERQ9BY12 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC31.32■■■□□ 2.6
SCAPERQ9BY12 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC31.32■■■□□ 2.6
SCAPERQ9BY12 CABP2-204ENST00000636477 941 ntTSL 5 BASIC31.32■■■□□ 2.6
SCAPERQ9BY12 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC31.32■■■□□ 2.6
SCAPERQ9BY12 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC31.32■■■□□ 2.6
SCAPERQ9BY12 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
SCAPERQ9BY12 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC31.31■■■□□ 2.6
SCAPERQ9BY12 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
SCAPERQ9BY12 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC31.31■■■□□ 2.6
SCAPERQ9BY12 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
SCAPERQ9BY12 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC31.31■■■□□ 2.6
SCAPERQ9BY12 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
SCAPERQ9BY12 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
SCAPERQ9BY12 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC31.31■■■□□ 2.6
SCAPERQ9BY12 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC31.31■■■□□ 2.6
SCAPERQ9BY12 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC31.31■■■□□ 2.6
SCAPERQ9BY12 GRAP-204ENST00000573099 846 ntTSL 3 BASIC31.31■■■□□ 2.6
SCAPERQ9BY12 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC31.31■■■□□ 2.6
SCAPERQ9BY12 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
SCAPERQ9BY12 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC31.3■■■□□ 2.6
SCAPERQ9BY12 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
SCAPERQ9BY12 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
SCAPERQ9BY12 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC31.3■■■□□ 2.6
SCAPERQ9BY12 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC31.3■■■□□ 2.6
SCAPERQ9BY12 AC026471.5-201ENST00000615068 467 ntBASIC31.3■■■□□ 2.6
SCAPERQ9BY12 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
SCAPERQ9BY12 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC31.29■■■□□ 2.6
SCAPERQ9BY12 AC116050.2-201ENST00000612102 1779 ntBASIC31.29■■■□□ 2.6
SCAPERQ9BY12 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC31.29■■■□□ 2.6
SCAPERQ9BY12 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
SCAPERQ9BY12 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
SCAPERQ9BY12 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC31.29■■■□□ 2.6
SCAPERQ9BY12 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
SCAPERQ9BY12 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC31.29■■■□□ 2.6
SCAPERQ9BY12 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC31.29■■■□□ 2.6
SCAPERQ9BY12 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC31.28■■■□□ 2.6
SCAPERQ9BY12 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC31.28■■■□□ 2.6
SCAPERQ9BY12 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC31.28■■■□□ 2.6
SCAPERQ9BY12 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
SCAPERQ9BY12 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
SCAPERQ9BY12 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC31.28■■■□□ 2.6
SCAPERQ9BY12 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC31.28■■■□□ 2.6
SCAPERQ9BY12 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC31.28■■■□□ 2.6
SCAPERQ9BY12 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
SCAPERQ9BY12 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC31.28■■■□□ 2.6
SCAPERQ9BY12 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
SCAPERQ9BY12 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
SCAPERQ9BY12 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC31.28■■■□□ 2.6
SCAPERQ9BY12 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC31.28■■■□□ 2.6
SCAPERQ9BY12 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
SCAPERQ9BY12 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC31.27■■■□□ 2.6
SCAPERQ9BY12 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
SCAPERQ9BY12 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC31.27■■■□□ 2.6
SCAPERQ9BY12 PKM-204ENST00000449901 2526 ntTSL 2 BASIC31.26■■■□□ 2.6
SCAPERQ9BY12 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC31.26■■■□□ 2.6
SCAPERQ9BY12 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC31.26■■■□□ 2.6
SCAPERQ9BY12 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC31.26■■■□□ 2.6
SCAPERQ9BY12 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC31.26■■■□□ 2.6
SCAPERQ9BY12 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC31.26■■■□□ 2.6
SCAPERQ9BY12 MOK-233ENST00000524214 1539 ntTSL 2 BASIC31.26■■■□□ 2.59
SCAPERQ9BY12 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC31.26■■■□□ 2.59
SCAPERQ9BY12 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC31.26■■■□□ 2.59
SCAPERQ9BY12 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
SCAPERQ9BY12 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
SCAPERQ9BY12 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
SCAPERQ9BY12 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms