Protein–RNA interactions for Protein: Q96CG8

CTHRC1, Collagen triple helix repeat-containing protein 1, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1Q96CG8 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CTHRC1Q96CG8 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
CTHRC1Q96CG8 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CTHRC1Q96CG8 AC007322.1-201ENST00000426983 750 ntBASIC19.17■□□□□ 0.66
CTHRC1Q96CG8 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CTHRC1Q96CG8 CDCA4P2-201ENST00000441182 718 ntBASIC19.17■□□□□ 0.66
CTHRC1Q96CG8 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.17■□□□□ 0.66
CTHRC1Q96CG8 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.17■□□□□ 0.66
CTHRC1Q96CG8 DLX3-202ENST00000512495 834 ntTSL 2 BASIC19.17■□□□□ 0.66
CTHRC1Q96CG8 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.17■□□□□ 0.66
CTHRC1Q96CG8 RAP2CP1-201ENST00000605103 478 ntBASIC19.17■□□□□ 0.66
CTHRC1Q96CG8 AC016405.3-201ENST00000607710 860 ntBASIC19.17■□□□□ 0.66
CTHRC1Q96CG8 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.17■□□□□ 0.66
CTHRC1Q96CG8 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CTHRC1Q96CG8 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
CTHRC1Q96CG8 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
CTHRC1Q96CG8 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CTHRC1Q96CG8 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CTHRC1Q96CG8 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.16■□□□□ 0.66
CTHRC1Q96CG8 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CTHRC1Q96CG8 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CTHRC1Q96CG8 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CTHRC1Q96CG8 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.16■□□□□ 0.66
CTHRC1Q96CG8 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
CTHRC1Q96CG8 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.16■□□□□ 0.66
CTHRC1Q96CG8 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.16■□□□□ 0.66
CTHRC1Q96CG8 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.16■□□□□ 0.66
CTHRC1Q96CG8 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CTHRC1Q96CG8 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.16■□□□□ 0.66
CTHRC1Q96CG8 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.16■□□□□ 0.66
CTHRC1Q96CG8 AC007225.1-201ENST00000566331 1836 ntBASIC19.16■□□□□ 0.66
CTHRC1Q96CG8 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CTHRC1Q96CG8 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.15■□□□□ 0.66
CTHRC1Q96CG8 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CTHRC1Q96CG8 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CTHRC1Q96CG8 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.15■□□□□ 0.66
CTHRC1Q96CG8 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CTHRC1Q96CG8 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CTHRC1Q96CG8 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC19.15■□□□□ 0.66
CTHRC1Q96CG8 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC19.15■□□□□ 0.66
CTHRC1Q96CG8 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.15■□□□□ 0.66
CTHRC1Q96CG8 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CTHRC1Q96CG8 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CTHRC1Q96CG8 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CTHRC1Q96CG8 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CTHRC1Q96CG8 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
CTHRC1Q96CG8 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CTHRC1Q96CG8 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC19.15■□□□□ 0.66
CTHRC1Q96CG8 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CTHRC1Q96CG8 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CTHRC1Q96CG8 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CTHRC1Q96CG8 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CTHRC1Q96CG8 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.14■□□□□ 0.66
CTHRC1Q96CG8 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CTHRC1Q96CG8 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.14■□□□□ 0.66
CTHRC1Q96CG8 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CTHRC1Q96CG8 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
CTHRC1Q96CG8 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CTHRC1Q96CG8 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
CTHRC1Q96CG8 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC19.14■□□□□ 0.65
CTHRC1Q96CG8 RARRES2P4-201ENST00000514074 484 ntBASIC19.14■□□□□ 0.65
CTHRC1Q96CG8 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
CTHRC1Q96CG8 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CTHRC1Q96CG8 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
CTHRC1Q96CG8 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CTHRC1Q96CG8 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.14■□□□□ 0.65
CTHRC1Q96CG8 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CTHRC1Q96CG8 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
CTHRC1Q96CG8 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CTHRC1Q96CG8 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CTHRC1Q96CG8 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CTHRC1Q96CG8 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
CTHRC1Q96CG8 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
CTHRC1Q96CG8 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
CTHRC1Q96CG8 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CTHRC1Q96CG8 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CTHRC1Q96CG8 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
CTHRC1Q96CG8 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CTHRC1Q96CG8 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CTHRC1Q96CG8 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
CTHRC1Q96CG8 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.13■□□□□ 0.65
CTHRC1Q96CG8 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC19.13■□□□□ 0.65
CTHRC1Q96CG8 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
CTHRC1Q96CG8 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.13■□□□□ 0.65
CTHRC1Q96CG8 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC19.13■□□□□ 0.65
CTHRC1Q96CG8 MIR2861-201ENST00000636310 90 ntBASIC19.13■□□□□ 0.65
CTHRC1Q96CG8 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CTHRC1Q96CG8 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CTHRC1Q96CG8 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
CTHRC1Q96CG8 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CTHRC1Q96CG8 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CTHRC1Q96CG8 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.13■□□□□ 0.65
CTHRC1Q96CG8 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.13■□□□□ 0.65
CTHRC1Q96CG8 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CTHRC1Q96CG8 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
CTHRC1Q96CG8 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
CTHRC1Q96CG8 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CTHRC1Q96CG8 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CTHRC1Q96CG8 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.12■□□□□ 0.65
CTHRC1Q96CG8 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms