Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ATG4AQ8WYN0 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
ATG4AQ8WYN0 NME4-202ENST00000382940 766 ntTSL 3 BASIC21.37■■□□□ 1.01
ATG4AQ8WYN0 AC079140.4-201ENST00000507448 529 ntBASIC21.37■■□□□ 1.01
ATG4AQ8WYN0 NME4-211ENST00000620944 1193 ntTSL 2 BASIC21.37■■□□□ 1.01
ATG4AQ8WYN0 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC21.37■■□□□ 1.01
ATG4AQ8WYN0 AL358852.1-201ENST00000623174 1268 ntBASIC21.37■■□□□ 1.01
ATG4AQ8WYN0 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
ATG4AQ8WYN0 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC21.37■■□□□ 1.01
ATG4AQ8WYN0 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
ATG4AQ8WYN0 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
ATG4AQ8WYN0 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ATG4AQ8WYN0 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
ATG4AQ8WYN0 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
ATG4AQ8WYN0 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC21.36■■□□□ 1.01
ATG4AQ8WYN0 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC21.36■■□□□ 1.01
ATG4AQ8WYN0 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
ATG4AQ8WYN0 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
ATG4AQ8WYN0 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC21.36■■□□□ 1.01
ATG4AQ8WYN0 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
ATG4AQ8WYN0 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
ATG4AQ8WYN0 AL121603.2-201ENST00000557373 2117 ntBASIC21.36■■□□□ 1.01
ATG4AQ8WYN0 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC21.36■■□□□ 1.01
ATG4AQ8WYN0 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
ATG4AQ8WYN0 KRT87P-202ENST00000534226 1464 ntBASIC21.36■■□□□ 1.01
ATG4AQ8WYN0 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
ATG4AQ8WYN0 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
ATG4AQ8WYN0 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
ATG4AQ8WYN0 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC21.36■■□□□ 1.01
ATG4AQ8WYN0 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
ATG4AQ8WYN0 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC21.36■■□□□ 1.01
ATG4AQ8WYN0 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
ATG4AQ8WYN0 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
ATG4AQ8WYN0 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
ATG4AQ8WYN0 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
ATG4AQ8WYN0 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
ATG4AQ8WYN0 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
ATG4AQ8WYN0 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
ATG4AQ8WYN0 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC21.35■■□□□ 1.01
ATG4AQ8WYN0 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
ATG4AQ8WYN0 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
ATG4AQ8WYN0 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
ATG4AQ8WYN0 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
ATG4AQ8WYN0 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
ATG4AQ8WYN0 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
ATG4AQ8WYN0 HYI-206ENST00000372434 1025 ntTSL 5 BASIC21.35■■□□□ 1.01
ATG4AQ8WYN0 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC21.35■■□□□ 1.01
ATG4AQ8WYN0 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC21.35■■□□□ 1.01
ATG4AQ8WYN0 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
ATG4AQ8WYN0 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
ATG4AQ8WYN0 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
ATG4AQ8WYN0 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
ATG4AQ8WYN0 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
ATG4AQ8WYN0 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
ATG4AQ8WYN0 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
ATG4AQ8WYN0 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
ATG4AQ8WYN0 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
ATG4AQ8WYN0 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC21.34■■□□□ 1.01
ATG4AQ8WYN0 SERP1-208ENST00000491660 830 ntTSL 2 BASIC21.34■■□□□ 1.01
ATG4AQ8WYN0 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC21.34■■□□□ 1.01
ATG4AQ8WYN0 RALB-208ENST00000631312 311 ntTSL 5 BASIC21.34■■□□□ 1.01
ATG4AQ8WYN0 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC21.34■■□□□ 1.01
ATG4AQ8WYN0 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
ATG4AQ8WYN0 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
ATG4AQ8WYN0 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC21.33■■□□□ 1.01
ATG4AQ8WYN0 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
ATG4AQ8WYN0 AL162377.1-201ENST00000618844 1793 ntBASIC21.33■■□□□ 1.01
ATG4AQ8WYN0 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC21.33■■□□□ 1.01
ATG4AQ8WYN0 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC21.33■■□□□ 1.01
ATG4AQ8WYN0 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
ATG4AQ8WYN0 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
ATG4AQ8WYN0 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC21.33■■□□□ 1.01
ATG4AQ8WYN0 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC21.33■■□□□ 1.01
ATG4AQ8WYN0 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
ATG4AQ8WYN0 AC008175.2-201ENST00000612840 297 ntBASIC21.33■■□□□ 1.01
ATG4AQ8WYN0 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
ATG4AQ8WYN0 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC21.33■■□□□ 1
ATG4AQ8WYN0 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC21.32■■□□□ 1
ATG4AQ8WYN0 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC21.32■■□□□ 1
ATG4AQ8WYN0 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC21.32■■□□□ 1
ATG4AQ8WYN0 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
ATG4AQ8WYN0 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
ATG4AQ8WYN0 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC21.32■■□□□ 1
ATG4AQ8WYN0 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
ATG4AQ8WYN0 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC21.32■■□□□ 1
ATG4AQ8WYN0 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
ATG4AQ8WYN0 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
ATG4AQ8WYN0 AC105265.2-201ENST00000467189 838 ntBASIC21.32■■□□□ 1
ATG4AQ8WYN0 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC21.32■■□□□ 1
ATG4AQ8WYN0 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC21.32■■□□□ 1
ATG4AQ8WYN0 RARRES2P11-201ENST00000635158 484 ntBASIC21.32■■□□□ 1
ATG4AQ8WYN0 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
ATG4AQ8WYN0 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
ATG4AQ8WYN0 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC21.32■■□□□ 1
ATG4AQ8WYN0 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
ATG4AQ8WYN0 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
ATG4AQ8WYN0 STAC-204ENST00000457375 1366 ntTSL 2 BASIC21.32■■□□□ 1
ATG4AQ8WYN0 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
ATG4AQ8WYN0 USP39-204ENST00000409766 2033 ntTSL 2 BASIC21.31■■□□□ 1
ATG4AQ8WYN0 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC21.31■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms