Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.75■□□□□ 0.91
HMGB4Q8WW32 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.75■□□□□ 0.91
HMGB4Q8WW32 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGB4Q8WW32 AC116050.2-201ENST00000612102 1779 ntBASIC20.74■□□□□ 0.91
HMGB4Q8WW32 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGB4Q8WW32 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HMGB4Q8WW32 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGB4Q8WW32 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
HMGB4Q8WW32 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HMGB4Q8WW32 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGB4Q8WW32 RN7SL471P-201ENST00000580476 299 ntBASIC20.74■□□□□ 0.91
HMGB4Q8WW32 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC20.74■□□□□ 0.91
HMGB4Q8WW32 AC069544.1-201ENST00000609399 999 ntBASIC20.74■□□□□ 0.91
HMGB4Q8WW32 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC20.74■□□□□ 0.91
HMGB4Q8WW32 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGB4Q8WW32 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGB4Q8WW32 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGB4Q8WW32 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGB4Q8WW32 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HMGB4Q8WW32 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.73■□□□□ 0.91
HMGB4Q8WW32 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
HMGB4Q8WW32 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HMGB4Q8WW32 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGB4Q8WW32 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGB4Q8WW32 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HMGB4Q8WW32 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGB4Q8WW32 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
HMGB4Q8WW32 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC20.73■□□□□ 0.91
HMGB4Q8WW32 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC20.73■□□□□ 0.91
HMGB4Q8WW32 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.73■□□□□ 0.91
HMGB4Q8WW32 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGB4Q8WW32 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGB4Q8WW32 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.73■□□□□ 0.91
HMGB4Q8WW32 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.73■□□□□ 0.91
HMGB4Q8WW32 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGB4Q8WW32 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.73■□□□□ 0.91
HMGB4Q8WW32 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGB4Q8WW32 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
HMGB4Q8WW32 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.72■□□□□ 0.91
HMGB4Q8WW32 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.72■□□□□ 0.91
HMGB4Q8WW32 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGB4Q8WW32 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGB4Q8WW32 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGB4Q8WW32 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGB4Q8WW32 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGB4Q8WW32 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.72■□□□□ 0.91
HMGB4Q8WW32 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HMGB4Q8WW32 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HMGB4Q8WW32 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB4Q8WW32 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB4Q8WW32 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB4Q8WW32 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.71■□□□□ 0.91
HMGB4Q8WW32 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB4Q8WW32 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20.71■□□□□ 0.91
HMGB4Q8WW32 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
HMGB4Q8WW32 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB4Q8WW32 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
HMGB4Q8WW32 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB4Q8WW32 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB4Q8WW32 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
HMGB4Q8WW32 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB4Q8WW32 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC20.71■□□□□ 0.91
HMGB4Q8WW32 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB4Q8WW32 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB4Q8WW32 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.71■□□□□ 0.91
HMGB4Q8WW32 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB4Q8WW32 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB4Q8WW32 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB4Q8WW32 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
HMGB4Q8WW32 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HMGB4Q8WW32 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HMGB4Q8WW32 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HMGB4Q8WW32 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
HMGB4Q8WW32 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.7■□□□□ 0.9
HMGB4Q8WW32 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HMGB4Q8WW32 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
HMGB4Q8WW32 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HMGB4Q8WW32 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.7■□□□□ 0.9
HMGB4Q8WW32 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
HMGB4Q8WW32 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC20.7■□□□□ 0.9
HMGB4Q8WW32 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC20.7■□□□□ 0.9
HMGB4Q8WW32 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
HMGB4Q8WW32 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC20.7■□□□□ 0.9
HMGB4Q8WW32 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC20.7■□□□□ 0.9
HMGB4Q8WW32 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.7■□□□□ 0.9
HMGB4Q8WW32 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.7■□□□□ 0.9
HMGB4Q8WW32 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
HMGB4Q8WW32 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HMGB4Q8WW32 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HMGB4Q8WW32 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HMGB4Q8WW32 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.7■□□□□ 0.9
HMGB4Q8WW32 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
HMGB4Q8WW32 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HMGB4Q8WW32 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
HMGB4Q8WW32 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HMGB4Q8WW32 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
HMGB4Q8WW32 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HMGB4Q8WW32 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
HMGB4Q8WW32 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HMGB4Q8WW32 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms