Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
SMC1BQ8NDV3 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
SMC1BQ8NDV3 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC24.68■■□□□ 1.54
SMC1BQ8NDV3 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC24.68■■□□□ 1.54
SMC1BQ8NDV3 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC24.68■■□□□ 1.54
SMC1BQ8NDV3 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC24.68■■□□□ 1.54
SMC1BQ8NDV3 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC24.68■■□□□ 1.54
SMC1BQ8NDV3 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
SMC1BQ8NDV3 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
SMC1BQ8NDV3 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC24.68■■□□□ 1.54
SMC1BQ8NDV3 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC24.67■■□□□ 1.54
SMC1BQ8NDV3 CYP21A1P-202ENST00000354927 1481 ntBASIC24.67■■□□□ 1.54
SMC1BQ8NDV3 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
SMC1BQ8NDV3 LTBR-211ENST00000543190 785 ntTSL 3 BASIC24.67■■□□□ 1.54
SMC1BQ8NDV3 AC005829.2-201ENST00000571422 1056 ntBASIC24.67■■□□□ 1.54
SMC1BQ8NDV3 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC24.67■■□□□ 1.54
SMC1BQ8NDV3 AL358472.4-201ENST00000633140 710 ntBASIC24.67■■□□□ 1.54
SMC1BQ8NDV3 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC24.67■■□□□ 1.54
SMC1BQ8NDV3 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
SMC1BQ8NDV3 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
SMC1BQ8NDV3 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC24.67■■□□□ 1.54
SMC1BQ8NDV3 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
SMC1BQ8NDV3 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
SMC1BQ8NDV3 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
SMC1BQ8NDV3 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC24.66■■□□□ 1.54
SMC1BQ8NDV3 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC24.66■■□□□ 1.54
SMC1BQ8NDV3 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
SMC1BQ8NDV3 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
SMC1BQ8NDV3 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
SMC1BQ8NDV3 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
SMC1BQ8NDV3 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
SMC1BQ8NDV3 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
SMC1BQ8NDV3 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC24.66■■□□□ 1.54
SMC1BQ8NDV3 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC24.66■■□□□ 1.54
SMC1BQ8NDV3 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC24.66■■□□□ 1.54
SMC1BQ8NDV3 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC24.66■■□□□ 1.54
SMC1BQ8NDV3 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
SMC1BQ8NDV3 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
SMC1BQ8NDV3 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC24.66■■□□□ 1.54
SMC1BQ8NDV3 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
SMC1BQ8NDV3 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
SMC1BQ8NDV3 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
SMC1BQ8NDV3 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
SMC1BQ8NDV3 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
SMC1BQ8NDV3 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
SMC1BQ8NDV3 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
SMC1BQ8NDV3 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC24.65■■□□□ 1.54
SMC1BQ8NDV3 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC24.65■■□□□ 1.54
SMC1BQ8NDV3 TMA16-209ENST00000513272 803 ntTSL 2 BASIC24.65■■□□□ 1.54
SMC1BQ8NDV3 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC24.65■■□□□ 1.54
SMC1BQ8NDV3 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC24.65■■□□□ 1.54
SMC1BQ8NDV3 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
SMC1BQ8NDV3 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
SMC1BQ8NDV3 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC24.64■■□□□ 1.54
SMC1BQ8NDV3 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC24.64■■□□□ 1.54
SMC1BQ8NDV3 AC007322.3-201ENST00000426526 701 ntBASIC24.64■■□□□ 1.54
SMC1BQ8NDV3 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC24.64■■□□□ 1.54
SMC1BQ8NDV3 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC24.64■■□□□ 1.54
SMC1BQ8NDV3 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC24.64■■□□□ 1.53
SMC1BQ8NDV3 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC24.64■■□□□ 1.53
SMC1BQ8NDV3 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC24.64■■□□□ 1.53
SMC1BQ8NDV3 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC24.64■■□□□ 1.53
SMC1BQ8NDV3 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC24.64■■□□□ 1.53
SMC1BQ8NDV3 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
SMC1BQ8NDV3 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC24.63■■□□□ 1.53
SMC1BQ8NDV3 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
SMC1BQ8NDV3 AC020928.2-201ENST00000588717 2197 ntBASIC24.63■■□□□ 1.53
SMC1BQ8NDV3 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
SMC1BQ8NDV3 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
SMC1BQ8NDV3 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC24.63■■□□□ 1.53
SMC1BQ8NDV3 KRT18P48-201ENST00000434763 852 ntBASIC24.63■■□□□ 1.53
SMC1BQ8NDV3 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC24.63■■□□□ 1.53
SMC1BQ8NDV3 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC24.63■■□□□ 1.53
SMC1BQ8NDV3 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
SMC1BQ8NDV3 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
SMC1BQ8NDV3 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
SMC1BQ8NDV3 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
SMC1BQ8NDV3 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
SMC1BQ8NDV3 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC24.62■■□□□ 1.53
SMC1BQ8NDV3 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
SMC1BQ8NDV3 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
SMC1BQ8NDV3 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC24.62■■□□□ 1.53
SMC1BQ8NDV3 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC24.62■■□□□ 1.53
SMC1BQ8NDV3 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC24.62■■□□□ 1.53
SMC1BQ8NDV3 NUDT16P1-203ENST00000513809 620 ntBASIC24.62■■□□□ 1.53
SMC1BQ8NDV3 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC24.62■■□□□ 1.53
SMC1BQ8NDV3 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC24.62■■□□□ 1.53
SMC1BQ8NDV3 REXO1L10P-201ENST00000615707 1290 ntBASIC24.62■■□□□ 1.53
SMC1BQ8NDV3 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
SMC1BQ8NDV3 CYP2D8P-201ENST00000433633 1490 ntBASIC24.62■■□□□ 1.53
SMC1BQ8NDV3 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
SMC1BQ8NDV3 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC24.61■■□□□ 1.53
SMC1BQ8NDV3 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC24.61■■□□□ 1.53
SMC1BQ8NDV3 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
SMC1BQ8NDV3 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
SMC1BQ8NDV3 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC24.61■■□□□ 1.53
SMC1BQ8NDV3 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC24.61■■□□□ 1.53
SMC1BQ8NDV3 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC24.61■■□□□ 1.53
SMC1BQ8NDV3 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
SMC1BQ8NDV3 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC24.61■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms