Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC23.69■■□□□ 1.38
SH3RF1Q7Z6J0 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SH3RF1Q7Z6J0 AL049796.1-201ENST00000565336 1766 ntBASIC23.68■■□□□ 1.38
SH3RF1Q7Z6J0 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC23.68■■□□□ 1.38
SH3RF1Q7Z6J0 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC23.68■■□□□ 1.38
SH3RF1Q7Z6J0 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SH3RF1Q7Z6J0 NAA20-201ENST00000310450 920 ntTSL 2 BASIC23.68■■□□□ 1.38
SH3RF1Q7Z6J0 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC23.68■■□□□ 1.38
SH3RF1Q7Z6J0 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC23.68■■□□□ 1.38
SH3RF1Q7Z6J0 AC006058.3-201ENST00000606217 1069 ntBASIC23.68■■□□□ 1.38
SH3RF1Q7Z6J0 MYC-209ENST00000641252 345 ntBASIC23.68■■□□□ 1.38
SH3RF1Q7Z6J0 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC23.68■■□□□ 1.38
SH3RF1Q7Z6J0 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
SH3RF1Q7Z6J0 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
SH3RF1Q7Z6J0 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SH3RF1Q7Z6J0 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SH3RF1Q7Z6J0 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC23.67■■□□□ 1.38
SH3RF1Q7Z6J0 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
SH3RF1Q7Z6J0 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
SH3RF1Q7Z6J0 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
SH3RF1Q7Z6J0 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SH3RF1Q7Z6J0 NARF-205ENST00000412079 1760 ntTSL 5 BASIC23.67■■□□□ 1.38
SH3RF1Q7Z6J0 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
SH3RF1Q7Z6J0 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
SH3RF1Q7Z6J0 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
SH3RF1Q7Z6J0 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC23.66■■□□□ 1.38
SH3RF1Q7Z6J0 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC23.66■■□□□ 1.38
SH3RF1Q7Z6J0 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
SH3RF1Q7Z6J0 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC23.66■■□□□ 1.38
SH3RF1Q7Z6J0 AC128676.1-201ENST00000454392 318 ntBASIC23.66■■□□□ 1.38
SH3RF1Q7Z6J0 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC23.66■■□□□ 1.38
SH3RF1Q7Z6J0 AC007322.4-201ENST00000509611 723 ntBASIC23.66■■□□□ 1.38
SH3RF1Q7Z6J0 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC23.66■■□□□ 1.38
SH3RF1Q7Z6J0 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC23.66■■□□□ 1.38
SH3RF1Q7Z6J0 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
SH3RF1Q7Z6J0 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
SH3RF1Q7Z6J0 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC23.66■■□□□ 1.38
SH3RF1Q7Z6J0 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
SH3RF1Q7Z6J0 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
SH3RF1Q7Z6J0 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
SH3RF1Q7Z6J0 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SH3RF1Q7Z6J0 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC23.65■■□□□ 1.38
SH3RF1Q7Z6J0 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
SH3RF1Q7Z6J0 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
SH3RF1Q7Z6J0 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
SH3RF1Q7Z6J0 AL512625.2-201ENST00000417533 625 ntBASIC23.65■■□□□ 1.38
SH3RF1Q7Z6J0 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC23.65■■□□□ 1.38
SH3RF1Q7Z6J0 MMAB-206ENST00000540016 945 ntTSL 3 BASIC23.65■■□□□ 1.38
SH3RF1Q7Z6J0 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
SH3RF1Q7Z6J0 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC23.65■■□□□ 1.38
SH3RF1Q7Z6J0 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
SH3RF1Q7Z6J0 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SH3RF1Q7Z6J0 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SH3RF1Q7Z6J0 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
SH3RF1Q7Z6J0 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
SH3RF1Q7Z6J0 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
SH3RF1Q7Z6J0 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
SH3RF1Q7Z6J0 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC23.64■■□□□ 1.37
SH3RF1Q7Z6J0 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.37
SH3RF1Q7Z6J0 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.37
SH3RF1Q7Z6J0 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
SH3RF1Q7Z6J0 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.37
SH3RF1Q7Z6J0 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC23.64■■□□□ 1.37
SH3RF1Q7Z6J0 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.37
SH3RF1Q7Z6J0 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
SH3RF1Q7Z6J0 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC23.63■■□□□ 1.37
SH3RF1Q7Z6J0 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
SH3RF1Q7Z6J0 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
SH3RF1Q7Z6J0 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC23.63■■□□□ 1.37
SH3RF1Q7Z6J0 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
SH3RF1Q7Z6J0 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC23.63■■□□□ 1.37
SH3RF1Q7Z6J0 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
SH3RF1Q7Z6J0 GAS7-202ENST00000396115 929 ntTSL 5 BASIC23.63■■□□□ 1.37
SH3RF1Q7Z6J0 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
SH3RF1Q7Z6J0 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC23.63■■□□□ 1.37
SH3RF1Q7Z6J0 AC097658.1-201ENST00000475555 843 ntBASIC23.63■■□□□ 1.37
SH3RF1Q7Z6J0 BET1L-207ENST00000529614 560 ntTSL 5 BASIC23.63■■□□□ 1.37
SH3RF1Q7Z6J0 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC23.63■■□□□ 1.37
SH3RF1Q7Z6J0 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC23.63■■□□□ 1.37
SH3RF1Q7Z6J0 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
SH3RF1Q7Z6J0 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
SH3RF1Q7Z6J0 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC23.63■■□□□ 1.37
SH3RF1Q7Z6J0 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SH3RF1Q7Z6J0 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SH3RF1Q7Z6J0 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SH3RF1Q7Z6J0 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
SH3RF1Q7Z6J0 BAALC-201ENST00000297574 801 ntTSL 3 BASIC23.62■■□□□ 1.37
SH3RF1Q7Z6J0 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SH3RF1Q7Z6J0 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SH3RF1Q7Z6J0 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC23.62■■□□□ 1.37
SH3RF1Q7Z6J0 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
SH3RF1Q7Z6J0 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC23.62■■□□□ 1.37
SH3RF1Q7Z6J0 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
SH3RF1Q7Z6J0 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC23.62■■□□□ 1.37
SH3RF1Q7Z6J0 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC23.62■■□□□ 1.37
SH3RF1Q7Z6J0 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC23.62■■□□□ 1.37
SH3RF1Q7Z6J0 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC23.62■■□□□ 1.37
SH3RF1Q7Z6J0 AC008694.1-202ENST00000636953 945 ntBASIC23.62■■□□□ 1.37
SH3RF1Q7Z6J0 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC23.62■■□□□ 1.37
SH3RF1Q7Z6J0 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms