Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC20.72■□□□□ 0.91
CCNFP41002 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCNFP41002 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CCNFP41002 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.72■□□□□ 0.91
CCNFP41002 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCNFP41002 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.72■□□□□ 0.91
CCNFP41002 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCNFP41002 AL162377.1-201ENST00000618844 1793 ntBASIC20.72■□□□□ 0.91
CCNFP41002 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.72■□□□□ 0.91
CCNFP41002 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.72■□□□□ 0.91
CCNFP41002 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
CCNFP41002 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCNFP41002 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCNFP41002 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCNFP41002 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCNFP41002 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.71■□□□□ 0.91
CCNFP41002 MIR6821-201ENST00000617625 74 ntBASIC20.71■□□□□ 0.91
CCNFP41002 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.71■□□□□ 0.91
CCNFP41002 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CCNFP41002 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
CCNFP41002 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCNFP41002 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCNFP41002 AC007952.6-201ENST00000573168 2673 ntBASIC20.71■□□□□ 0.91
CCNFP41002 AC003957.1-201ENST00000625108 2673 ntBASIC20.71■□□□□ 0.91
CCNFP41002 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
CCNFP41002 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCNFP41002 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCNFP41002 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCNFP41002 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCNFP41002 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCNFP41002 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCNFP41002 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.7■□□□□ 0.9
CCNFP41002 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCNFP41002 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCNFP41002 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC20.7■□□□□ 0.9
CCNFP41002 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCNFP41002 CCDC92B-201ENST00000575506 885 ntBASIC20.7■□□□□ 0.9
CCNFP41002 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCNFP41002 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20.7■□□□□ 0.9
CCNFP41002 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCNFP41002 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
CCNFP41002 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCNFP41002 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCNFP41002 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCNFP41002 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCNFP41002 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCNFP41002 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.7■□□□□ 0.9
CCNFP41002 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCNFP41002 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCNFP41002 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCNFP41002 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCNFP41002 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCNFP41002 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
CCNFP41002 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCNFP41002 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.69■□□□□ 0.9
CCNFP41002 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCNFP41002 KRT18P14-201ENST00000534205 1250 ntBASIC20.69■□□□□ 0.9
CCNFP41002 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCNFP41002 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.69■□□□□ 0.9
CCNFP41002 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCNFP41002 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCNFP41002 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCNFP41002 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.69■□□□□ 0.9
CCNFP41002 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCNFP41002 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCNFP41002 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CCNFP41002 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CCNFP41002 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCNFP41002 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.68■□□□□ 0.9
CCNFP41002 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.68■□□□□ 0.9
CCNFP41002 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCNFP41002 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCNFP41002 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCNFP41002 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCNFP41002 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
CCNFP41002 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCNFP41002 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCNFP41002 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCNFP41002 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.68■□□□□ 0.9
CCNFP41002 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCNFP41002 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CCNFP41002 KRT87P-202ENST00000534226 1464 ntBASIC20.68■□□□□ 0.9
CCNFP41002 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.68■□□□□ 0.9
CCNFP41002 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.67■□□□□ 0.9
CCNFP41002 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCNFP41002 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
CCNFP41002 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.67■□□□□ 0.9
CCNFP41002 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.67■□□□□ 0.9
CCNFP41002 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.67■□□□□ 0.9
CCNFP41002 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.67■□□□□ 0.9
CCNFP41002 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.67■□□□□ 0.9
CCNFP41002 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCNFP41002 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCNFP41002 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCNFP41002 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCNFP41002 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCNFP41002 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.67■□□□□ 0.9
CCNFP41002 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCNFP41002 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC20.67■□□□□ 0.9
CCNFP41002 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 12.5 ms