Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
MSX2P35548 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.65■□□□□ 0.74
MSX2P35548 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
MSX2P35548 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
MSX2P35548 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
MSX2P35548 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
MSX2P35548 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
MSX2P35548 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC19.65■□□□□ 0.74
MSX2P35548 PXK-203ENST00000383715 1756 ntTSL 5 BASIC19.65■□□□□ 0.74
MSX2P35548 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.65■□□□□ 0.74
MSX2P35548 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
MSX2P35548 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
MSX2P35548 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
MSX2P35548 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
MSX2P35548 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
MSX2P35548 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
MSX2P35548 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
MSX2P35548 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MSX2P35548 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
MSX2P35548 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
MSX2P35548 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
MSX2P35548 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.64■□□□□ 0.73
MSX2P35548 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.64■□□□□ 0.73
MSX2P35548 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
MSX2P35548 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
MSX2P35548 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
MSX2P35548 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
MSX2P35548 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.64■□□□□ 0.73
MSX2P35548 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
MSX2P35548 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MSX2P35548 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MSX2P35548 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC19.64■□□□□ 0.73
MSX2P35548 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSX2P35548 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.63■□□□□ 0.73
MSX2P35548 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
MSX2P35548 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
MSX2P35548 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.63■□□□□ 0.73
MSX2P35548 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSX2P35548 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSX2P35548 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.63■□□□□ 0.73
MSX2P35548 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSX2P35548 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSX2P35548 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC19.63■□□□□ 0.73
MSX2P35548 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC19.63■□□□□ 0.73
MSX2P35548 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
MSX2P35548 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC19.63■□□□□ 0.73
MSX2P35548 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSX2P35548 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSX2P35548 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSX2P35548 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.63■□□□□ 0.73
MSX2P35548 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSX2P35548 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSX2P35548 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSX2P35548 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.63■□□□□ 0.73
MSX2P35548 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.62■□□□□ 0.73
MSX2P35548 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
MSX2P35548 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
MSX2P35548 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSX2P35548 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
MSX2P35548 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSX2P35548 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSX2P35548 AL158211.5-201ENST00000623583 2518 ntBASIC19.62■□□□□ 0.73
MSX2P35548 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
MSX2P35548 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSX2P35548 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.62■□□□□ 0.73
MSX2P35548 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC19.62■□□□□ 0.73
MSX2P35548 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC19.62■□□□□ 0.73
MSX2P35548 AC009299.2-201ENST00000482477 511 ntBASIC19.62■□□□□ 0.73
MSX2P35548 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
MSX2P35548 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC19.62■□□□□ 0.73
MSX2P35548 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.62■□□□□ 0.73
MSX2P35548 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSX2P35548 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSX2P35548 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
MSX2P35548 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.62■□□□□ 0.73
MSX2P35548 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSX2P35548 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSX2P35548 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSX2P35548 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
MSX2P35548 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
MSX2P35548 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
MSX2P35548 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSX2P35548 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MSX2P35548 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.61■□□□□ 0.73
MSX2P35548 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.61■□□□□ 0.73
MSX2P35548 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MSX2P35548 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
MSX2P35548 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
MSX2P35548 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
MSX2P35548 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MSX2P35548 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC19.61■□□□□ 0.73
MSX2P35548 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MSX2P35548 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
MSX2P35548 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.61■□□□□ 0.73
MSX2P35548 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
MSX2P35548 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
MSX2P35548 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MSX2P35548 AC125437.2-201ENST00000625180 2167 ntBASIC19.6■□□□□ 0.73
MSX2P35548 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MSX2P35548 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms