Protein–RNA interactions for Protein: O95832

CLDN1, Claudin-1, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1O95832 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
CLDN1O95832 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN1O95832 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN1O95832 KRT16P2-201ENST00000414673 1423 ntBASIC18.41■□□□□ 0.54
CLDN1O95832 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN1O95832 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN1O95832 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN1O95832 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
CLDN1O95832 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN1O95832 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC18.41■□□□□ 0.54
CLDN1O95832 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN1O95832 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC18.41■□□□□ 0.54
CLDN1O95832 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC18.41■□□□□ 0.54
CLDN1O95832 KRT18P35-201ENST00000510488 1269 ntBASIC18.41■□□□□ 0.54
CLDN1O95832 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN1O95832 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN1O95832 PPOX-219ENST00000544598 813 ntTSL 2 BASIC18.41■□□□□ 0.54
CLDN1O95832 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC18.41■□□□□ 0.54
CLDN1O95832 AL034346.1-201ENST00000568244 1277 ntBASIC18.41■□□□□ 0.54
CLDN1O95832 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.41■□□□□ 0.54
CLDN1O95832 AC097493.4-201ENST00000641197 219 ntBASIC18.41■□□□□ 0.54
CLDN1O95832 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN1O95832 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC18.41■□□□□ 0.54
CLDN1O95832 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
CLDN1O95832 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC18.41■□□□□ 0.54
CLDN1O95832 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
CLDN1O95832 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN1O95832 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN1O95832 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN1O95832 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC18.4■□□□□ 0.54
CLDN1O95832 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN1O95832 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN1O95832 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN1O95832 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN1O95832 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
CLDN1O95832 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
CLDN1O95832 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN1O95832 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN1O95832 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.4■□□□□ 0.54
CLDN1O95832 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN1O95832 RNF146-206ENST00000480444 843 ntTSL 2 BASIC18.4■□□□□ 0.54
CLDN1O95832 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN1O95832 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC18.4■□□□□ 0.54
CLDN1O95832 SOX15-203ENST00000570788 1093 ntBASIC18.4■□□□□ 0.54
CLDN1O95832 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN1O95832 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC18.4■□□□□ 0.54
CLDN1O95832 AC012306.2-201ENST00000609350 630 ntBASIC18.4■□□□□ 0.54
CLDN1O95832 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN1O95832 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.4■□□□□ 0.54
CLDN1O95832 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN1O95832 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN1O95832 STK25-234ENST00000535007 2459 ntTSL 2 BASIC18.4■□□□□ 0.54
CLDN1O95832 OR7E47P-201ENST00000546390 1422 ntBASIC18.4■□□□□ 0.54
CLDN1O95832 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.4■□□□□ 0.54
CLDN1O95832 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC18.39■□□□□ 0.54
CLDN1O95832 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CLDN1O95832 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC18.39■□□□□ 0.53
CLDN1O95832 EP400NL-214ENST00000641289 2402 ntBASIC18.39■□□□□ 0.53
CLDN1O95832 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.39■□□□□ 0.53
CLDN1O95832 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.39■□□□□ 0.53
CLDN1O95832 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
CLDN1O95832 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
CLDN1O95832 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
CLDN1O95832 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC18.39■□□□□ 0.53
CLDN1O95832 NT5C-211ENST00000582170 653 ntTSL 3 BASIC18.39■□□□□ 0.53
CLDN1O95832 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC18.39■□□□□ 0.53
CLDN1O95832 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CLDN1O95832 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLDN1O95832 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLDN1O95832 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
CLDN1O95832 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CLDN1O95832 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
CLDN1O95832 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLDN1O95832 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC18.38■□□□□ 0.53
CLDN1O95832 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLDN1O95832 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CLDN1O95832 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
CLDN1O95832 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC18.38■□□□□ 0.53
CLDN1O95832 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC18.38■□□□□ 0.53
CLDN1O95832 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CLDN1O95832 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.38■□□□□ 0.53
CLDN1O95832 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLDN1O95832 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLDN1O95832 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
CLDN1O95832 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CLDN1O95832 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLDN1O95832 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
CLDN1O95832 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC18.38■□□□□ 0.53
CLDN1O95832 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLDN1O95832 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLDN1O95832 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC18.37■□□□□ 0.53
CLDN1O95832 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC18.37■□□□□ 0.53
CLDN1O95832 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLDN1O95832 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC18.37■□□□□ 0.53
CLDN1O95832 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLDN1O95832 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLDN1O95832 ARMC10P1-201ENST00000313754 855 ntBASIC18.37■□□□□ 0.53
CLDN1O95832 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLDN1O95832 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLDN1O95832 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms