Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CNOT4O95628 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CNOT4O95628 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CNOT4O95628 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.29■□□□□ 0.52
CNOT4O95628 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CNOT4O95628 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
CNOT4O95628 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CNOT4O95628 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
CNOT4O95628 CASP6-205ENST00000505486 538 ntTSL 4 BASIC18.29■□□□□ 0.52
CNOT4O95628 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC18.29■□□□□ 0.52
CNOT4O95628 AC083906.2-201ENST00000511578 360 ntBASIC18.29■□□□□ 0.52
CNOT4O95628 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CNOT4O95628 GAMT-205ENST00000640762 751 ntTSL 5 BASIC18.29■□□□□ 0.52
CNOT4O95628 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CNOT4O95628 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
CNOT4O95628 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CNOT4O95628 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CNOT4O95628 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC18.29■□□□□ 0.52
CNOT4O95628 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC18.28■□□□□ 0.52
CNOT4O95628 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CNOT4O95628 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CNOT4O95628 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC18.28■□□□□ 0.52
CNOT4O95628 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.28■□□□□ 0.52
CNOT4O95628 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC18.28■□□□□ 0.52
CNOT4O95628 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CNOT4O95628 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CNOT4O95628 METTL15-202ENST00000403099 795 ntTSL 5 BASIC18.28■□□□□ 0.52
CNOT4O95628 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CNOT4O95628 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CNOT4O95628 RARRES2P4-201ENST00000514074 484 ntBASIC18.28■□□□□ 0.52
CNOT4O95628 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CNOT4O95628 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
CNOT4O95628 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CNOT4O95628 MYB-221ENST00000527615 2381 ntTSL 5 BASIC18.28■□□□□ 0.52
CNOT4O95628 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CNOT4O95628 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CNOT4O95628 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CNOT4O95628 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CNOT4O95628 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CNOT4O95628 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CNOT4O95628 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC18.28■□□□□ 0.52
CNOT4O95628 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC18.27■□□□□ 0.52
CNOT4O95628 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CNOT4O95628 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
CNOT4O95628 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CNOT4O95628 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
CNOT4O95628 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CNOT4O95628 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CNOT4O95628 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CNOT4O95628 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
CNOT4O95628 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CNOT4O95628 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CNOT4O95628 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.27■□□□□ 0.52
CNOT4O95628 PTPA-214ENST00000423100 988 ntTSL 2 BASIC18.27■□□□□ 0.52
CNOT4O95628 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC18.27■□□□□ 0.52
CNOT4O95628 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC18.27■□□□□ 0.52
CNOT4O95628 AC100791.3-201ENST00000617619 330 ntBASIC18.27■□□□□ 0.52
CNOT4O95628 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC18.27■□□□□ 0.52
CNOT4O95628 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CNOT4O95628 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CNOT4O95628 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CNOT4O95628 WWC2-AS2-201ENST00000578387 2183 ntBASIC18.27■□□□□ 0.51
CNOT4O95628 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CNOT4O95628 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC18.26■□□□□ 0.51
CNOT4O95628 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC18.26■□□□□ 0.51
CNOT4O95628 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CNOT4O95628 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CNOT4O95628 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC18.26■□□□□ 0.51
CNOT4O95628 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
CNOT4O95628 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC18.26■□□□□ 0.51
CNOT4O95628 SLC29A4P1-201ENST00000398760 971 ntBASIC18.26■□□□□ 0.51
CNOT4O95628 TSPY6P-201ENST00000448518 926 ntBASIC18.26■□□□□ 0.51
CNOT4O95628 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CNOT4O95628 KRT18P6-201ENST00000555540 1265 ntBASIC18.26■□□□□ 0.51
CNOT4O95628 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC18.26■□□□□ 0.51
CNOT4O95628 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CNOT4O95628 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CNOT4O95628 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC18.26■□□□□ 0.51
CNOT4O95628 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CNOT4O95628 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CNOT4O95628 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CNOT4O95628 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CNOT4O95628 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CNOT4O95628 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
CNOT4O95628 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
CNOT4O95628 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CNOT4O95628 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CNOT4O95628 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CNOT4O95628 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CNOT4O95628 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC18.25■□□□□ 0.51
CNOT4O95628 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CNOT4O95628 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC18.25■□□□□ 0.51
CNOT4O95628 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CNOT4O95628 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CNOT4O95628 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.25■□□□□ 0.51
CNOT4O95628 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CNOT4O95628 AC105036.2-201ENST00000569468 176 ntBASIC18.25■□□□□ 0.51
CNOT4O95628 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC18.25■□□□□ 0.51
CNOT4O95628 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.25■□□□□ 0.51
CNOT4O95628 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms