Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC31.33■■■□□ 2.61
RAPGEF3O95398 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC31.33■■■□□ 2.61
RAPGEF3O95398 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC31.33■■■□□ 2.61
RAPGEF3O95398 PREB-202ENST00000406567 1910 ntTSL 5 BASIC31.33■■■□□ 2.61
RAPGEF3O95398 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC31.33■■■□□ 2.61
RAPGEF3O95398 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC31.32■■■□□ 2.6
RAPGEF3O95398 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC31.32■■■□□ 2.6
RAPGEF3O95398 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC31.32■■■□□ 2.6
RAPGEF3O95398 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC31.32■■■□□ 2.6
RAPGEF3O95398 AF186192.3-201ENST00000583427 947 ntBASIC31.32■■■□□ 2.6
RAPGEF3O95398 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
RAPGEF3O95398 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
RAPGEF3O95398 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC31.31■■■□□ 2.6
RAPGEF3O95398 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
RAPGEF3O95398 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC31.31■■■□□ 2.6
RAPGEF3O95398 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC31.31■■■□□ 2.6
RAPGEF3O95398 RBM42-202ENST00000586618 771 ntTSL 3 BASIC31.31■■■□□ 2.6
RAPGEF3O95398 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
RAPGEF3O95398 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC31.31■■■□□ 2.6
RAPGEF3O95398 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
RAPGEF3O95398 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC31.3■■■□□ 2.6
RAPGEF3O95398 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC31.3■■■□□ 2.6
RAPGEF3O95398 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC31.3■■■□□ 2.6
RAPGEF3O95398 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC31.3■■■□□ 2.6
RAPGEF3O95398 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
RAPGEF3O95398 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
RAPGEF3O95398 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC31.3■■■□□ 2.6
RAPGEF3O95398 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
RAPGEF3O95398 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC31.3■■■□□ 2.6
RAPGEF3O95398 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
RAPGEF3O95398 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
RAPGEF3O95398 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
RAPGEF3O95398 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
RAPGEF3O95398 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
RAPGEF3O95398 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
RAPGEF3O95398 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC31.29■■■□□ 2.6
RAPGEF3O95398 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC31.29■■■□□ 2.6
RAPGEF3O95398 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC31.29■■■□□ 2.6
RAPGEF3O95398 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC31.29■■■□□ 2.6
RAPGEF3O95398 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC31.29■■■□□ 2.6
RAPGEF3O95398 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
RAPGEF3O95398 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC31.29■■■□□ 2.6
RAPGEF3O95398 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC31.29■■■□□ 2.6
RAPGEF3O95398 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
RAPGEF3O95398 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
RAPGEF3O95398 AC079598.2-202ENST00000546624 1451 ntBASIC31.28■■■□□ 2.6
RAPGEF3O95398 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
RAPGEF3O95398 AC113347.1-201ENST00000413321 391 ntBASIC31.28■■■□□ 2.6
RAPGEF3O95398 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC31.28■■■□□ 2.6
RAPGEF3O95398 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC31.28■■■□□ 2.6
RAPGEF3O95398 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC31.28■■■□□ 2.6
RAPGEF3O95398 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
RAPGEF3O95398 CREM-210ENST00000374721 2020 ntTSL 5 BASIC31.27■■■□□ 2.6
RAPGEF3O95398 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
RAPGEF3O95398 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC31.27■■■□□ 2.6
RAPGEF3O95398 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
RAPGEF3O95398 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
RAPGEF3O95398 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
RAPGEF3O95398 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
RAPGEF3O95398 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC31.27■■■□□ 2.6
RAPGEF3O95398 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC31.27■■■□□ 2.6
RAPGEF3O95398 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC31.27■■■□□ 2.6
RAPGEF3O95398 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
RAPGEF3O95398 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC31.27■■■□□ 2.6
RAPGEF3O95398 RPS15-203ENST00000586096 570 ntTSL 2 BASIC31.27■■■□□ 2.6
RAPGEF3O95398 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC31.27■■■□□ 2.6
RAPGEF3O95398 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC31.27■■■□□ 2.6
RAPGEF3O95398 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC31.27■■■□□ 2.6
RAPGEF3O95398 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
RAPGEF3O95398 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC31.26■■■□□ 2.6
RAPGEF3O95398 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
RAPGEF3O95398 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC31.26■■■□□ 2.59
RAPGEF3O95398 RBM17P1-201ENST00000453646 1190 ntBASIC31.26■■■□□ 2.59
RAPGEF3O95398 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC31.26■■■□□ 2.59
RAPGEF3O95398 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
RAPGEF3O95398 NTF6B-201ENST00000591913 560 ntBASIC31.26■■■□□ 2.59
RAPGEF3O95398 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC31.26■■■□□ 2.59
RAPGEF3O95398 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC31.25■■■□□ 2.59
RAPGEF3O95398 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC31.25■■■□□ 2.59
RAPGEF3O95398 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
RAPGEF3O95398 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
RAPGEF3O95398 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC31.25■■■□□ 2.59
RAPGEF3O95398 FAM197Y1-201ENST00000421178 764 ntBASIC31.25■■■□□ 2.59
RAPGEF3O95398 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC31.25■■■□□ 2.59
RAPGEF3O95398 DUT-205ENST00000558813 769 ntTSL 2 BASIC31.25■■■□□ 2.59
RAPGEF3O95398 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC31.25■■■□□ 2.59
RAPGEF3O95398 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC31.25■■■□□ 2.59
RAPGEF3O95398 Six3os1_6.1-201ENST00000620790 196 ntBASIC31.25■■■□□ 2.59
RAPGEF3O95398 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
RAPGEF3O95398 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC31.25■■■□□ 2.59
RAPGEF3O95398 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC31.25■■■□□ 2.59
RAPGEF3O95398 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC31.25■■■□□ 2.59
RAPGEF3O95398 AC073508.3-201ENST00000619697 1419 ntBASIC31.24■■■□□ 2.59
RAPGEF3O95398 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC31.24■■■□□ 2.59
RAPGEF3O95398 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
RAPGEF3O95398 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC31.24■■■□□ 2.59
RAPGEF3O95398 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC31.24■■■□□ 2.59
RAPGEF3O95398 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
RAPGEF3O95398 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
RAPGEF3O95398 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC31.24■■■□□ 2.59
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms