Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CDKL5O76039 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC23.98■■□□□ 1.43
CDKL5O76039 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC23.98■■□□□ 1.43
CDKL5O76039 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
CDKL5O76039 ANKRD20A6P-201ENST00000618763 204 ntBASIC23.98■■□□□ 1.43
CDKL5O76039 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
CDKL5O76039 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC23.98■■□□□ 1.43
CDKL5O76039 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC23.98■■□□□ 1.43
CDKL5O76039 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC23.98■■□□□ 1.43
CDKL5O76039 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC23.98■■□□□ 1.43
CDKL5O76039 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
CDKL5O76039 AC007225.1-201ENST00000566331 1836 ntBASIC23.98■■□□□ 1.43
CDKL5O76039 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC23.97■■□□□ 1.43
CDKL5O76039 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
CDKL5O76039 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CDKL5O76039 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
CDKL5O76039 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC23.97■■□□□ 1.43
CDKL5O76039 HSCB-202ENST00000398941 955 ntTSL 2 BASIC23.97■■□□□ 1.43
CDKL5O76039 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
CDKL5O76039 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC23.97■■□□□ 1.43
CDKL5O76039 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
CDKL5O76039 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC23.97■■□□□ 1.43
CDKL5O76039 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
CDKL5O76039 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CDKL5O76039 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC23.96■■□□□ 1.43
CDKL5O76039 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC23.96■■□□□ 1.43
CDKL5O76039 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC23.96■■□□□ 1.43
CDKL5O76039 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC23.96■■□□□ 1.43
CDKL5O76039 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CDKL5O76039 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
CDKL5O76039 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC23.96■■□□□ 1.43
CDKL5O76039 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC23.96■■□□□ 1.43
CDKL5O76039 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
CDKL5O76039 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
CDKL5O76039 BRI3-207ENST00000539286 699 ntTSL 2 BASIC23.96■■□□□ 1.43
CDKL5O76039 AC010536.3-201ENST00000620306 533 ntBASIC23.96■■□□□ 1.43
CDKL5O76039 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC23.96■■□□□ 1.43
CDKL5O76039 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
CDKL5O76039 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
CDKL5O76039 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
CDKL5O76039 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC23.95■■□□□ 1.42
CDKL5O76039 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
CDKL5O76039 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC23.95■■□□□ 1.42
CDKL5O76039 AC016769.1-201ENST00000409132 1010 ntBASIC23.95■■□□□ 1.42
CDKL5O76039 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC23.95■■□□□ 1.42
CDKL5O76039 AL162430.1-201ENST00000480705 870 ntBASIC23.95■■□□□ 1.42
CDKL5O76039 SPI1-203ENST00000533030 661 ntTSL 2 BASIC23.95■■□□□ 1.42
CDKL5O76039 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC23.95■■□□□ 1.42
CDKL5O76039 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC23.95■■□□□ 1.42
CDKL5O76039 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC23.95■■□□□ 1.42
CDKL5O76039 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC23.95■■□□□ 1.42
CDKL5O76039 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
CDKL5O76039 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC23.95■■□□□ 1.42
CDKL5O76039 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC23.95■■□□□ 1.42
CDKL5O76039 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC23.94■■□□□ 1.42
CDKL5O76039 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
CDKL5O76039 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
CDKL5O76039 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC23.94■■□□□ 1.42
CDKL5O76039 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
CDKL5O76039 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
CDKL5O76039 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CDKL5O76039 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CDKL5O76039 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC23.94■■□□□ 1.42
CDKL5O76039 AC007322.3-201ENST00000426526 701 ntBASIC23.94■■□□□ 1.42
CDKL5O76039 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC23.94■■□□□ 1.42
CDKL5O76039 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC23.94■■□□□ 1.42
CDKL5O76039 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC23.94■■□□□ 1.42
CDKL5O76039 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC23.94■■□□□ 1.42
CDKL5O76039 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CDKL5O76039 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC23.94■■□□□ 1.42
CDKL5O76039 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC23.94■■□□□ 1.42
CDKL5O76039 AC027702.1-201ENST00000563810 1770 ntBASIC23.93■■□□□ 1.42
CDKL5O76039 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CDKL5O76039 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
CDKL5O76039 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC23.93■■□□□ 1.42
CDKL5O76039 CDV3P1-201ENST00000471403 739 ntBASIC23.93■■□□□ 1.42
CDKL5O76039 TERF1P5-201ENST00000477545 1207 ntBASIC23.93■■□□□ 1.42
CDKL5O76039 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
CDKL5O76039 WWOX-218ENST00000627394 894 ntTSL 5 BASIC23.93■■□□□ 1.42
CDKL5O76039 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC23.93■■□□□ 1.42
CDKL5O76039 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
CDKL5O76039 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC23.93■■□□□ 1.42
CDKL5O76039 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
CDKL5O76039 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC23.93■■□□□ 1.42
CDKL5O76039 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC23.93■■□□□ 1.42
CDKL5O76039 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CDKL5O76039 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CDKL5O76039 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC23.93■■□□□ 1.42
CDKL5O76039 FEM1AP1-201ENST00000431297 1995 ntBASIC23.92■■□□□ 1.42
CDKL5O76039 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
CDKL5O76039 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC23.92■■□□□ 1.42
CDKL5O76039 FP700111.2-201ENST00000619190 1892 ntBASIC23.92■■□□□ 1.42
CDKL5O76039 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
CDKL5O76039 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
CDKL5O76039 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
CDKL5O76039 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
CDKL5O76039 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC23.92■■□□□ 1.42
CDKL5O76039 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CDKL5O76039 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
CDKL5O76039 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms