Protein–RNA interactions for Protein: O75631

UPK3A, Uroplakin-3a, humanhuman

Predictions only

Length 287 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3AO75631 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
UPK3AO75631 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
UPK3AO75631 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
UPK3AO75631 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
UPK3AO75631 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
UPK3AO75631 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
UPK3AO75631 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
UPK3AO75631 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
UPK3AO75631 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
UPK3AO75631 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
UPK3AO75631 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
UPK3AO75631 AC006015.1-201ENST00000429970 570 ntBASIC18.46■□□□□ 0.55
UPK3AO75631 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
UPK3AO75631 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC18.46■□□□□ 0.55
UPK3AO75631 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC18.46■□□□□ 0.55
UPK3AO75631 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC18.46■□□□□ 0.55
UPK3AO75631 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC18.46■□□□□ 0.55
UPK3AO75631 TFG-210ENST00000620299 1289 ntTSL 5 BASIC18.46■□□□□ 0.55
UPK3AO75631 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC18.46■□□□□ 0.55
UPK3AO75631 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.46■□□□□ 0.55
UPK3AO75631 MYCNOS-205ENST00000641950 531 ntBASIC18.46■□□□□ 0.55
UPK3AO75631 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
UPK3AO75631 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
UPK3AO75631 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC18.46■□□□□ 0.55
UPK3AO75631 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
UPK3AO75631 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
UPK3AO75631 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
UPK3AO75631 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
UPK3AO75631 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC18.45■□□□□ 0.54
UPK3AO75631 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC18.45■□□□□ 0.54
UPK3AO75631 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
UPK3AO75631 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.45■□□□□ 0.54
UPK3AO75631 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
UPK3AO75631 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
UPK3AO75631 KRT18P11-201ENST00000435214 1283 ntBASIC18.45■□□□□ 0.54
UPK3AO75631 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
UPK3AO75631 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC18.45■□□□□ 0.54
UPK3AO75631 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
UPK3AO75631 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC18.45■□□□□ 0.54
UPK3AO75631 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC18.45■□□□□ 0.54
UPK3AO75631 AC092437.1-201ENST00000624794 1048 ntBASIC18.45■□□□□ 0.54
UPK3AO75631 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
UPK3AO75631 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC18.45■□□□□ 0.54
UPK3AO75631 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
UPK3AO75631 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
UPK3AO75631 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
UPK3AO75631 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
UPK3AO75631 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC18.45■□□□□ 0.54
UPK3AO75631 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC18.45■□□□□ 0.54
UPK3AO75631 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC18.45■□□□□ 0.54
UPK3AO75631 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
UPK3AO75631 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
UPK3AO75631 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
UPK3AO75631 AP005212.1-201ENST00000581547 1997 ntBASIC18.44■□□□□ 0.54
UPK3AO75631 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
UPK3AO75631 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC18.44■□□□□ 0.54
UPK3AO75631 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
UPK3AO75631 GABARAPL3-202ENST00000624044 1851 ntBASIC18.44■□□□□ 0.54
UPK3AO75631 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
UPK3AO75631 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
UPK3AO75631 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC18.44■□□□□ 0.54
UPK3AO75631 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC18.44■□□□□ 0.54
UPK3AO75631 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC18.44■□□□□ 0.54
UPK3AO75631 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC18.44■□□□□ 0.54
UPK3AO75631 SLC7A5P1-201ENST00000568957 537 ntBASIC18.44■□□□□ 0.54
UPK3AO75631 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
UPK3AO75631 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
UPK3AO75631 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
UPK3AO75631 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
UPK3AO75631 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
UPK3AO75631 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
UPK3AO75631 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.44■□□□□ 0.54
UPK3AO75631 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
UPK3AO75631 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
UPK3AO75631 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
UPK3AO75631 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
UPK3AO75631 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
UPK3AO75631 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
UPK3AO75631 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC18.43■□□□□ 0.54
UPK3AO75631 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
UPK3AO75631 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
UPK3AO75631 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
UPK3AO75631 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
UPK3AO75631 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC18.43■□□□□ 0.54
UPK3AO75631 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
UPK3AO75631 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC18.43■□□□□ 0.54
UPK3AO75631 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
UPK3AO75631 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
UPK3AO75631 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
UPK3AO75631 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
UPK3AO75631 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
UPK3AO75631 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
UPK3AO75631 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
UPK3AO75631 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
UPK3AO75631 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
UPK3AO75631 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
UPK3AO75631 AC073314.1-201ENST00000568729 2216 ntBASIC18.42■□□□□ 0.54
UPK3AO75631 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
UPK3AO75631 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
UPK3AO75631 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms