Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC29.44■■■□□ 2.3
NPHP4O75161 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC29.44■■■□□ 2.3
NPHP4O75161 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
NPHP4O75161 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC29.44■■■□□ 2.3
NPHP4O75161 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
NPHP4O75161 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC29.44■■■□□ 2.3
NPHP4O75161 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC29.44■■■□□ 2.3
NPHP4O75161 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC29.44■■■□□ 2.3
NPHP4O75161 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC29.44■■■□□ 2.3
NPHP4O75161 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
NPHP4O75161 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC29.43■■■□□ 2.3
NPHP4O75161 TERF1P1-201ENST00000311003 1181 ntBASIC29.43■■■□□ 2.3
NPHP4O75161 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC29.43■■■□□ 2.3
NPHP4O75161 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC29.43■■■□□ 2.3
NPHP4O75161 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC29.43■■■□□ 2.3
NPHP4O75161 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
NPHP4O75161 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
NPHP4O75161 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
NPHP4O75161 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
NPHP4O75161 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC29.42■■■□□ 2.3
NPHP4O75161 DUT-205ENST00000558813 769 ntTSL 2 BASIC29.42■■■□□ 2.3
NPHP4O75161 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC29.42■■■□□ 2.3
NPHP4O75161 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
NPHP4O75161 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC29.42■■■□□ 2.3
NPHP4O75161 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
NPHP4O75161 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC29.41■■■□□ 2.3
NPHP4O75161 RER1-204ENST00000378518 522 ntTSL 3 BASIC29.41■■■□□ 2.3
NPHP4O75161 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
NPHP4O75161 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC29.41■■■□□ 2.3
NPHP4O75161 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
NPHP4O75161 AC079598.2-202ENST00000546624 1451 ntBASIC29.41■■■□□ 2.3
NPHP4O75161 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC29.41■■■□□ 2.3
NPHP4O75161 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC29.4■■■□□ 2.3
NPHP4O75161 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
NPHP4O75161 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC29.4■■■□□ 2.3
NPHP4O75161 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC29.4■■■□□ 2.3
NPHP4O75161 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC29.4■■■□□ 2.3
NPHP4O75161 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC29.4■■■□□ 2.3
NPHP4O75161 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
NPHP4O75161 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC29.4■■■□□ 2.3
NPHP4O75161 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC29.4■■■□□ 2.3
NPHP4O75161 DECR2-212ENST00000627716 352 ntTSL 2 BASIC29.4■■■□□ 2.3
NPHP4O75161 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC29.4■■■□□ 2.3
NPHP4O75161 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC29.4■■■□□ 2.3
NPHP4O75161 SRI-203ENST00000419179 1307 ntTSL 2 BASIC29.39■■■□□ 2.3
NPHP4O75161 HTR7P1-201ENST00000538670 1336 ntBASIC29.39■■■□□ 2.3
NPHP4O75161 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
NPHP4O75161 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC29.39■■■□□ 2.3
NPHP4O75161 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
NPHP4O75161 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC29.39■■■□□ 2.3
NPHP4O75161 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC29.39■■■□□ 2.3
NPHP4O75161 Six3os1_6.1-201ENST00000620790 196 ntBASIC29.39■■■□□ 2.3
NPHP4O75161 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
NPHP4O75161 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
NPHP4O75161 AC073508.3-201ENST00000619697 1419 ntBASIC29.39■■■□□ 2.3
NPHP4O75161 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.29
NPHP4O75161 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.29
NPHP4O75161 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC29.39■■■□□ 2.29
NPHP4O75161 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC29.39■■■□□ 2.29
NPHP4O75161 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC29.38■■■□□ 2.29
NPHP4O75161 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC29.38■■■□□ 2.29
NPHP4O75161 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC29.38■■■□□ 2.29
NPHP4O75161 NTF6B-201ENST00000591913 560 ntBASIC29.38■■■□□ 2.29
NPHP4O75161 GLDC-219ENST00000640208 420 ntTSL 2 BASIC29.38■■■□□ 2.29
NPHP4O75161 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
NPHP4O75161 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC29.38■■■□□ 2.29
NPHP4O75161 MOK-233ENST00000524214 1539 ntTSL 2 BASIC29.38■■■□□ 2.29
NPHP4O75161 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
NPHP4O75161 FAM197Y1-201ENST00000421178 764 ntBASIC29.37■■■□□ 2.29
NPHP4O75161 AP000525.1-201ENST00000608286 694 ntBASIC29.37■■■□□ 2.29
NPHP4O75161 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
NPHP4O75161 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC29.37■■■□□ 2.29
NPHP4O75161 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC29.37■■■□□ 2.29
NPHP4O75161 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC29.37■■■□□ 2.29
NPHP4O75161 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC29.37■■■□□ 2.29
NPHP4O75161 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC29.37■■■□□ 2.29
NPHP4O75161 NFE2L3P1-201ENST00000588207 1959 ntBASIC29.37■■■□□ 2.29
NPHP4O75161 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
NPHP4O75161 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC29.37■■■□□ 2.29
NPHP4O75161 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC29.37■■■□□ 2.29
NPHP4O75161 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC29.37■■■□□ 2.29
NPHP4O75161 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
NPHP4O75161 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC29.36■■■□□ 2.29
NPHP4O75161 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
NPHP4O75161 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
NPHP4O75161 AL353807.1-201ENST00000427475 662 ntBASIC29.36■■■□□ 2.29
NPHP4O75161 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
NPHP4O75161 DUX4L26-201ENST00000489078 1255 ntBASIC29.36■■■□□ 2.29
NPHP4O75161 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC29.36■■■□□ 2.29
NPHP4O75161 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC29.36■■■□□ 2.29
NPHP4O75161 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
NPHP4O75161 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
NPHP4O75161 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
NPHP4O75161 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC29.35■■■□□ 2.29
NPHP4O75161 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC29.35■■■□□ 2.29
NPHP4O75161 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC29.35■■■□□ 2.29
NPHP4O75161 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC29.35■■■□□ 2.29
NPHP4O75161 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC29.35■■■□□ 2.29
NPHP4O75161 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC29.35■■■□□ 2.29
NPHP4O75161 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC29.35■■■□□ 2.29
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms